RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 EPXP11678 715 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 CD22P20273 847 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 HIST1H1TP22492 207 aaPredicted RBP16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 SSR2P43308 183 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 MGAT5Q09328 741 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 DUSP8Q13202 625 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 PDK4Q16654 411 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 HIST2H2ACQ16777 129 aaPredicted RBP16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 AP5B1Q2VPB7 878 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 PAGE2BQ5JRK9 111 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 HIST2H2AA3Q6FI13 130 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 KIF18BQ86Y91 864 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 LACC1Q8IV20 430 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 DND1Q8IYX4 353 aaKnown RBP16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 C7orf57Q8NEG2 295 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 DOK4Q8TEW6 326 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 ESAMQ96AP7 390 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 HSPBAP1Q96EW2 488 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 C18orf12Q96KH6 178 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 ART5Q96L15 291 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 KRT12Q99456 494 aa16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 WDR83Q9BRX9 315 aaKnown RBP16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 ZNF629Q9UEG4 869 aaPredicted RBP16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 CHCHD2Q9Y6H1 151 aaPredicted RBP16.82■□□□□ 0.28
UPK3BP1-201ENST00000428678 KIAA1549Q9HCM3 1950 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 STK16O75716 305 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 FBXO45P0C2W1 286 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 SERPINB3P29508 390 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 TIMP3P35625 211 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 GGT5P36269 586 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 ZNF136P52737 540 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 SLC12A2P55011 1212 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 IGLV3-21P80748 117 aaPredicted RBP16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 PLIN5Q00G26 463 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 IRF8Q02556 426 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 LAPTM5Q13571 262 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 DGAT2L6Q6ZPD8 337 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 SLC29A4Q7RTT9 530 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 GPSM1Q86YR5 675 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 ANKMY2Q8IV38 441 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 SPATA6LQ8N4H0 392 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 LINC01560Q8TB33 94 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 WDR34Q96EX3 536 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 RBM18Q96H35 190 aaKnown RBP16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 FBXL20Q96IG2 436 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 ZNF597Q96LX8 424 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 MS4A8Q9BY19 250 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 PHACTR1Q9C0D0 580 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 DERL2Q9GZP9 239 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 NEUROD4Q9HD90 331 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 CNOT11Q9UKZ1 510 aaKnown RBP16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 PPP2R2CQ9Y2T4 447 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 TEX264Q9Y6I9 313 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 ARID1AO14497 2285 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 DOCK7Q96N67 2140 aa16.81■□□□□ 0.28
UPK3BP1-201ENST00000428678 MED12Q93074 2177 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 IQANK1A0A1B0GTG1 560 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 EEF1E1-BLOC1S5C9J1V9 151 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 SAP18O00422 153 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 EEF1E1O43324 174 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 TRAPPC6AO75865 159 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 INHBBP09529 407 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 PCNAP12004 261 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 AGFG1P52594 562 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 HERVK_113P63132 956 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 ERVK-8P63133 956 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 CRYZQ08257 329 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 CHIT1Q13231 466 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 FRG1Q14331 258 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 TMEM35AQ53FP2 167 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 TMEM198Q66K66 360 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 SULT1C3Q6IMI6 304 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 POMZP3Q6PJE2 187 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 CLEC9AQ6UXN8 241 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 CHSY3Q70JA7 882 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 TAOK1Q7L7X3 1001 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 PM20D2Q8IYS1 436 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 BBOF1Q8ND07 529 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 ACTRT1Q8TDG2 376 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 ZNF473Q8WTR7 871 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 LRRC39Q96DD0 335 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 TIMP4Q99727 224 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 YIPF4Q9BSR8 244 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 ERVK-6Q9BXR3 956 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 DDX47Q9H0S4 455 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 EPB41L4BQ9H329 900 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 RPF2Q9H7B2 306 aaKnown RBP16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 POPDC3Q9HBV1 291 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 CAMK2AQ9UQM7 478 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 ERVK-19Q9WJR5 959 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 ZANQ9Y493 2812 aa16.8■□□□□ 0.28
UPK3BP1-201ENST00000428678 CLCA1A8K7I4 914 aa16.79■□□□□ 0.28
UPK3BP1-201ENST00000428678 CCNT2O60583 730 aaKnown RBP16.79■□□□□ 0.28
UPK3BP1-201ENST00000428678 SCELO95171 688 aa16.79■□□□□ 0.28
UPK3BP1-201ENST00000428678 TGFB1P01137 390 aa16.79■□□□□ 0.28
UPK3BP1-201ENST00000428678 C1QAP02745 245 aa16.79■□□□□ 0.28
UPK3BP1-201ENST00000428678 ALOX15P16050 662 aaPredicted RBP16.79■□□□□ 0.28
UPK3BP1-201ENST00000428678 HOXC12P31275 282 aa16.79■□□□□ 0.28
UPK3BP1-201ENST00000428678 DCAF7P61962 342 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms