RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 KDM4EB2RXH2 506 aaPredicted RBP10.67□□□□□ -0.7
USP4-204ENST00000416417 SIX3O95343 332 aaPredicted RBP10.67□□□□□ -0.7
USP4-204ENST00000416417 IGHG3P01860 377 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 IGKV3-11P04433 115 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 COX7A2P14406 83 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 ALOX15P16050 662 aaPredicted RBP10.67□□□□□ -0.7
USP4-204ENST00000416417 EPB42P16452 691 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 MSX1P28360 303 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 MAN2A2P49641 1150 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 WNT3P56703 355 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 IGLV3-21P80748 117 aaPredicted RBP10.67□□□□□ -0.7
USP4-204ENST00000416417 SLC7A5Q01650 507 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 TNFRSF17Q02223 184 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 SLC10A1Q14973 349 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 TESK1Q15569 626 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 UAP1Q16222 522 aaPredicted RBP10.67□□□□□ -0.7
USP4-204ENST00000416417 CPSF6Q16630 551 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP4-204ENST00000416417 NDUFAF5Q5TEU4 345 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 CYS1Q717R9 158 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 MAATS1Q7Z4T9 603 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 TMEM200AQ86VY9 491 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 DMRTC2Q8IXT2 367 aaPredicted RBP10.67□□□□□ -0.7
USP4-204ENST00000416417 GOLM1Q8NBJ4 401 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 FAM13CQ8NE31 585 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 OR10G3Q8NGC4 313 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 OR8K3Q8NH51 312 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 UBE2E3Q969T4 207 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 RGMAQ96B86 450 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 SLC6A15Q9H2J7 730 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 PROK2Q9HC23 129 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 CPSF2Q9P2I0 782 aaKnown RBP10.67□□□□□ -0.7
USP4-204ENST00000416417 RNF14Q9UBS8 474 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 Q9UFV3 132 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 RNF11Q9Y3C5 154 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 HIVEP1P15822 2718 aa10.67□□□□□ -0.7
USP4-204ENST00000416417 A0A1B0GVC2 190 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 A0A1W2PR48 441 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 HMX2A2RU54 273 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 LRRC3CA6NJW4 275 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 CLPSP04118 112 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 C2P06681 752 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 GSTA2P09210 222 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 GFAPP14136 432 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 CAPN3P20807 821 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 CRABP2P29373 138 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 DLX5P56178 289 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 KCNJ2P63252 427 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 MYBPHQ13203 477 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 SLC22A10Q63ZE4 541 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 BICRALQ6AI39 1079 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 B3GNT6Q6ZMB0 384 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 RGS9BPQ6ZS82 235 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 ACAD11Q709F0 780 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 GOLGA7Q7Z5G4 137 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 RBM18Q96H35 190 aaKnown RBP10.66□□□□□ -0.7
USP4-204ENST00000416417 SGCZQ96LD1 299 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 CDK15Q96Q40 435 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 ZNF559Q9BR84 538 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 ZNF717Q9BY31 904 aaPredicted RBP10.66□□□□□ -0.7
USP4-204ENST00000416417 ZNF407Q9C0G0 2248 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 ACTR8Q9H981 624 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 SH2D2AQ9NP31 389 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 SNX15Q9NRS6 342 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 ZNF358Q9NW07 568 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 ACOT9Q9Y305 439 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 ASB4Q9Y574 426 aa10.66□□□□□ -0.7
USP4-204ENST00000416417 TRGV5A0A0B4J1U4 118 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 FIGNL2A6NMB9 653 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 AQP7O14520 342 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 BCKDKO14874 412 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 PGRMC2O15173 223 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 PROM1O43490 865 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 OR10H2O60403 315 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 AIFM1O95831 613 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 HOXD4P09016 255 aaPredicted RBP10.65□□□□□ -0.7
USP4-204ENST00000416417 SSTR4P31391 388 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 STX2P32856 288 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 BSGP35613 385 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 PLIN5Q00G26 463 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 ILF2Q12905 390 aaKnown RBP10.65□□□□□ -0.7
USP4-204ENST00000416417 SETDB1Q15047 1291 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 MPEG1Q2M385 716 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 C1orf185Q5T7R7 199 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 RPS27LQ71UM5 84 aaKnown RBP10.65□□□□□ -0.7
USP4-204ENST00000416417 WDR53Q7Z5U6 358 aaPredicted RBP10.65□□□□□ -0.7
USP4-204ENST00000416417 NUBPLQ8TB37 319 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 SLC22A8Q8TCC7 542 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 PAQR8Q8TEZ7 354 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 TANKQ92844 425 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 SPACA9Q96E40 222 aaPredicted RBP10.65□□□□□ -0.7
USP4-204ENST00000416417 FBXL20Q96IG2 436 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 WWTR1Q9GZV5 400 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 PHF11Q9UIL8 331 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 UTP11Q9Y3A2 253 aaKnown RBP10.65□□□□□ -0.7
USP4-204ENST00000416417 CCDC168Q8NDH2 2452 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 F8P00451 2351 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 HCFC1P51610 2035 aa10.65□□□□□ -0.7
USP4-204ENST00000416417 NCKAP5O14513 1909 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 A0A0A6YYD5 115 aa10.64□□□□□ -0.71
USP4-204ENST00000416417 IQANK1A0A1B0GTG1 560 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms