RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SF3B6Q9Y3B4 125 aaKnown RBP9.36□□□□□ -0.91
SS18-203ENST00000415083 BOLA1Q9Y3E2 137 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 WNT6Q9Y6F9 365 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 SH3D21A4FU49 640 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 NDUFB5O43674 189 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 PRKRAO75569 313 aaKnown RBP9.36□□□□□ -0.91
SS18-203ENST00000415083 CYP17A1P05093 508 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 WEE1P30291 646 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 ILKQ13418 452 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 FZD5Q13467 585 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 TSTA3Q13630 321 aaPredicted RBP9.36□□□□□ -0.91
SS18-203ENST00000415083 SYPL1Q16563 259 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 CCDC149Q6ZUS6 474 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 MAPKAP1Q9BPZ7 522 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 NEK6Q9HC98 313 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 IL36AQ9UHA7 158 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 CARD8Q9Y2G2 431 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 PEX16Q9Y5Y5 336 aa9.36□□□□□ -0.91
SS18-203ENST00000415083 SHISA3A0PJX4 238 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SLC35F4A4IF30 521 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 HIDE1A8MVS5 230 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 TLR4O00206 839 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 RGS13O14921 159 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 CHRM5P08912 532 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 OSMP13725 252 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ITGB7P26010 798 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 CHI3L1P36222 383 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 PRIM2P49643 509 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 PSPHP78330 225 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 HOXC5Q00444 222 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SLAMF1Q13291 335 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 MADCAM1Q13477 382 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 PIN1Q13526 163 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 ZNF77Q15935 545 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ZNF805Q5CZA5 627 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 TMC5Q6UXY8 1006 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 GATAD2AQ86YP4 633 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 PHC2Q8IXK0 858 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 DEPDC4Q8N2C3 294 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SYT14Q8NB59 555 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 PLA2G15Q8NCC3 412 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 FAM46DQ8NEK8 389 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 OR5D16Q8NGK9 328 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 OR9A1PQ8NGU1 263 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 NXPE3Q969Y0 559 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 DTD2Q96FN9 168 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 F2RL3Q96RI0 385 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 OR52A5Q9H2C5 316 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 A4GALTQ9NPC4 353 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 PLSCR3Q9NRY6 295 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 NDUFB11Q9NX14 153 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 TEX10Q9NXF1 929 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 A0A1W2PPV9 198 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 FEZF1A0PJY2 475 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SMIM30A4D0T7 59 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 EFCAB10A6NFE3 127 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 OTOL1A6NHN0 477 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 M0R3H8 397 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 FHP07954 510 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SOAT1P35610 550 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 MAN2A2P49641 1150 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 PNLIPRP1P54315 467 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 POLR2LP62875 67 aaKnown RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 RHAGQ02094 409 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 CNTN1Q12860 1018 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.35□□□□□ -0.91
SS18-203ENST00000415083 TRIM60Q495X7 471 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 REEP3Q6NUK4 255 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ERAP2Q6P179 960 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ZER1Q7Z7L7 766 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ZNF485Q8NCK3 441 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ARRDC3Q96B67 414 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 RSPRY1Q96DX4 576 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SLC30A2Q9BRI3 323 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 DYRK4Q9NR20 520 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 IMPAD1Q9NX62 359 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SAGE1Q9NXZ1 904 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 CHST2Q9Y4C5 530 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ANHXE9PGG2 379 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 DVL2O14641 736 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 HOXC11O43248 304 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 ASNA1O43681 348 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 NME6O75414 186 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 APOL3O95236 402 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 LALBAP00709 142 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 CYP2A6P11509 494 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 HOXB3P14651 431 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 PTPN2P17706 415 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 UQCRC2P22695 453 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 KCNJ5P48544 419 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 RSBN1Q5VWQ0 802 aaPredicted RBP9.35□□□□□ -0.91
SS18-203ENST00000415083 ANKRD33Q7Z3H0 272 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 SPRED2Q7Z698 418 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 HOMEZQ8IX15 550 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 MORN4Q8NDC4 146 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 OR52I1Q8NGK6 324 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ZNF649Q9BS31 505 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 ACAT2Q9BWD1 397 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 MMP28Q9H239 520 aa9.35□□□□□ -0.91
SS18-203ENST00000415083 IGKV1-8A0A0C4DH67 115 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms