RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TNFSF15O95150 251 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 PABPC4LP0CB38 370 aaKnown RBP12.69□□□□□ -0.38
LIMS1-204ENST00000409441 IL1RNP18510 177 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 ASMTP46597 345 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 RAB15P59190 212 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 PHC1P78364 1004 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 CHRNB3Q05901 458 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 COL9A2Q14055 689 aaPredicted RBP12.69□□□□□ -0.38
LIMS1-204ENST00000409441 FAM214AQ32MH5 1076 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIMS1-204ENST00000409441 DEPDC1Q5TB30 811 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 CEACAM20Q6UY09 585 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 MICU2Q8IYU8 434 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 CBR4Q8N4T8 237 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 TFAP2CQ92754 450 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 PMEPA1Q969W9 287 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 F2RL3Q96RI0 385 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 CHID1Q9BWS9 393 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 MS4A8Q9BY19 250 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 ASPSCR1Q9BZE9 553 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 SLC6A16Q9GZN6 736 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 KLHL31Q9H511 634 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 PIF1Q9H611 641 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 KAT8Q9H7Z6 458 aaKnown RBP12.69□□□□□ -0.38
LIMS1-204ENST00000409441 POLR1BQ9H9Y6 1135 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 PNPLA3Q9NST1 481 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 PPT2Q9UMR5 302 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 PCDHGA8Q9Y5G5 932 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 B3GALT1Q9Y5Z6 326 aa12.69□□□□□ -0.38
LIMS1-204ENST00000409441 ACOX3O15254 700 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 TPST1O60507 370 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 SCRG1O75711 98 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 PRSS23O95084 383 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 TIAF1O95411 115 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 TACR1P25103 407 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 KIR3DL1P43629 444 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 EMP3P54852 163 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 STXBP1P61764 594 aaKnown RBP12.68□□□□□ -0.38
LIMS1-204ENST00000409441 PLIN5Q00G26 463 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 ABHD18Q0P651 414 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 SPIN4Q56A73 249 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 TOR1AIP1Q5JTV8 583 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 TMEM164Q5U3C3 297 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 KHDRBS2Q5VWX1 349 aaKnown RBP12.68□□□□□ -0.38
LIMS1-204ENST00000409441 FOXB2Q5VYV0 432 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 TMEM214Q6NUQ4 689 aaKnown RBP12.68□□□□□ -0.38
LIMS1-204ENST00000409441 TTC29Q8NA56 475 aaPredicted RBP12.68□□□□□ -0.38
LIMS1-204ENST00000409441 OR10A6Q8NH74 314 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 MS4A6EQ96DS6 147 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 FAM120BQ96EK7 910 aaKnown RBP12.68□□□□□ -0.38
LIMS1-204ENST00000409441 RNF145Q96MT1 663 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 NDC1Q9BTX1 674 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 DDA1Q9BW61 102 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 REXO4Q9GZR2 422 aaKnown RBP12.68□□□□□ -0.38
LIMS1-204ENST00000409441 AICDAQ9GZX7 198 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 MAGIXQ9H6Y5 334 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 OLAHQ9NV23 265 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 FAM120CQ9NX05 1096 aaKnown RBP12.68□□□□□ -0.38
LIMS1-204ENST00000409441 SIRT5Q9NXA8 310 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 PCDHB14Q9Y5E9 798 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 AK5Q9Y6K8 562 aa12.68□□□□□ -0.38
LIMS1-204ENST00000409441 KIF26BQ2KJY2 2108 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 RNF103-CHMP3A0A140T963 221 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 URADA6NGE7 173 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 C9orf172C9J069 976 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 SAP18O00422 153 aaKnown RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 CXCR6O00574 342 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 CLOCKO15516 846 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ETHE1O95571 254 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 NTRK1P04629 796 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ALAS2P22557 587 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 PAX7P23759 505 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 RPL5P46777 297 aaKnown RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 GZMMP51124 257 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ARSFP54793 590 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 RAB8AP61006 207 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 GABREP78334 506 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ACSM2AQ08AH3 577 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 CAMK2BQ13554 666 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 APOFQ13790 326 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 NDUFA9Q16795 377 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 PGS1Q32NB8 556 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ADPRMQ3LIE5 342 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 TMEM35AQ53FP2 167 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 YOD1Q5VVQ6 348 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 GARNL3Q5VVW2 1013 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ACSM2BQ68CK6 577 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ARHGEF39Q8N4T4 335 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 OR8J2Q8NGG1 315 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 UTP15Q8TED0 518 aaKnown RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 RNF31Q96EP0 1072 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 C11orf24Q96F05 449 aaPredicted RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 REXO5Q96IC2 774 aaKnown RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 SLC46A1Q96NT5 459 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 TEFMQ96QE5 360 aaKnown RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 SEPHS2Q99611 448 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 ZPBPQ9BS86 351 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 SCNM1Q9BWG6 230 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 SLC7A5P2Q9GIP4 190 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 YIPF3Q9GZM5 350 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms