RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 ANKRD22Q5VYY1 191 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 TRIM40Q6P9F5 258 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 SBSNQ6UWP8 590 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 LYPD8Q6UX82 237 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 PLEKHM3Q6ZWE6 761 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 RASGEF1CQ8N431 466 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 RNF214Q8ND24 703 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 MCUQ8NE86 351 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 OR2L5Q8NG80 312 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 MBD3L2Q8NHZ7 208 aaPredicted RBP8.62□□□□□ -1.03
NEDD9-203ENST00000397378 SLC22A8Q8TCC7 542 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 MAIP1Q8WWC4 291 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 SREK1Q8WXA9 508 aaKnown RBP8.62□□□□□ -1.03
NEDD9-203ENST00000397378 NTNG2Q96CW9 530 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 SPACA9Q96E40 222 aaPredicted RBP8.62□□□□□ -1.03
NEDD9-203ENST00000397378 PDLIM5Q96HC4 596 aaKnown RBP8.62□□□□□ -1.03
NEDD9-203ENST00000397378 SERPINB12Q96P63 405 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 CSF3RQ99062 836 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 TIMP4Q99727 224 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 WDR83Q9BRX9 315 aaKnown RBP8.62□□□□□ -1.03
NEDD9-203ENST00000397378 PITHD1Q9GZP4 211 aaPredicted RBP8.62□□□□□ -1.03
NEDD9-203ENST00000397378 RBSNQ9H1K0 784 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 CXorf56Q9H5V9 222 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 COPS7AQ9UBW8 275 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 SLC22A14Q9Y267 594 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 IKBKGQ9Y6K9 419 aa8.62□□□□□ -1.03
NEDD9-203ENST00000397378 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.62□□□□□ -1.033e-14■■□□□ 12.9
NEDD9-203ENST00000397378 SVEP1Q4LDE5 3571 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 USF3Q68DE3 2245 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 C15orf38-AP3S2A0A0A6YYH1 394 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 DEFB108AA8MXU0 73 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 SIAH2O43255 324 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 H2AFYO75367 372 aaKnown RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 CLEC3AO75596 197 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 ETHE1O95571 254 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 TBX6O95947 436 aaPredicted RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 C1GALT1C1LP0DN25 315 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 GNAZP19086 355 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 TNNI3P19429 210 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 GDF1P27539 372 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 GABRB3P28472 473 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 SOX18P35713 384 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 TRPC1P48995 793 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 MTTPP55157 894 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 GPS1Q13098 491 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 RBM20Q5T481 1227 aaKnown RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 PRAMEF20Q5VT98 475 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 VASNQ6EMK4 673 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 ABHD17CQ6PCB6 329 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 TMIGD1Q6UXZ0 262 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 SLCO4C1Q6ZQN7 724 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 SYDE1Q6ZW31 735 aaPredicted RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 GALNT7Q86SF2 657 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 AGGF1Q8N302 714 aaeCLIP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 PPM1NQ8N819 430 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 GABPB2Q8TAK5 448 aaPredicted RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 SIGLEC10Q96LC7 697 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 REXO4Q9GZR2 422 aaKnown RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 NT5DC2Q9H857 520 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 CALHM2Q9HA72 323 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 LYRM4Q9HD34 91 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 HOMER3Q9NSC5 361 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 IARS2Q9NSE4 1012 aaKnown RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 ZNF226Q9NYT6 803 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 CNOT11Q9UKZ1 510 aaKnown RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 TESMINQ9Y4I5 508 aa8.61□□□□□ -1.03
NEDD9-203ENST00000397378 CHCHD2Q9Y6H1 151 aaPredicted RBP8.61□□□□□ -1.03
NEDD9-203ENST00000397378 TGP01266 2768 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 A0A0G2JK05 382 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 MYOCOSA0A1B0GUC4 107 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 ANKRD33BA6NCL7 494 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 ANKDD1BA6NHY2 528 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 CTIFO43310 598 aaKnown RBP8.6□□□□□ -1.03
NEDD9-203ENST00000397378 LDB3O75112 727 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 TRIM3O75382 744 aaPredicted RBP8.6□□□□□ -1.03
NEDD9-203ENST00000397378 AHSGP02765 367 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 IGKV3-11P04433 115 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 CCDC175P0C221 793 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 FBXO45P0C2W1 286 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 CERS1P27544 350 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 CFPP27918 469 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 SERPINB3P29508 390 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 CPOXP36551 454 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 VPS41P49754 854 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 PLA2G16P53816 162 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 TERF1P54274 439 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 IGLV3-21P80748 117 aaPredicted RBP8.6□□□□□ -1.03
NEDD9-203ENST00000397378 CDKL1Q00532 357 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 PDAP1Q13442 181 aaKnown RBP8.6□□□□□ -1.03
NEDD9-203ENST00000397378 TRIP13Q15645 432 aaPredicted RBP8.6□□□□□ -1.03
NEDD9-203ENST00000397378 NTRK2Q16620 822 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 PPP1R3AQ16821 1122 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 NHSL2Q5HYW2 709 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 TBCELQ5QJ74 424 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 C6orf52Q5T4I8 152 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 UBAP2Q5T6F2 1119 aaKnown RBP8.6□□□□□ -1.03
NEDD9-203ENST00000397378 C12orf54Q6X4T0 127 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 BTLAQ7Z6A9 289 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 TMEM139Q8IV31 216 aa8.6□□□□□ -1.03
NEDD9-203ENST00000397378 CNTN4Q8IWV2 1026 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms