RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LRRC25Q8N386 305 aaPredicted RBP6.9□□□□□ -1.3
UPF2-203ENST00000397053 BBS10Q8TAM1 723 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 MND1Q9BWT6 205 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 REEP4Q9H6H4 257 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 RNF11Q9Y3C5 154 aa6.9□□□□□ -1.3
UPF2-203ENST00000397053 IGLV3-22A0A075B6J6 115 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 C1orf226A1L170 272 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 SLC1A7O00341 560 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 SOCS2O14508 198 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 TSPAN4O14817 238 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 EMC8O43402 210 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 BCAS1O75363 584 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 ZNF821O75541 412 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 CD63P08962 238 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 MRPL3P09001 348 aaKnown RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 DDCP20711 480 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 AK4P27144 223 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 NAA10P41227 235 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 ADAM15Q13444 863 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 GBX1Q14549 363 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 CES4AQ5XG92 561 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 MFSD5Q6N075 450 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 ZNF761Q86XN6 746 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 ZNF440Q8IYI8 595 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 TEX19Q8NA77 164 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 SMG8Q8ND04 991 aaKnown RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 GLYATL2Q8WU03 294 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 SGTBQ96EQ0 304 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 KCTD3Q9Y597 815 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 CROCC2H7BZ55 1655 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 SHOXO15266 292 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 FMO6PO60774 539 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 DIRAS1O95057 198 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 OXSR1O95747 527 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 AK1P00568 194 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 IL1AP01583 271 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 PORP16435 677 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 HNRNPA2B1P22626 353 aaKnown RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 RAB4BP61018 213 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 CRYZQ08257 329 aaKnown RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 SLC35G1Q2M3R5 365 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 FIGLAQ6QHK4 219 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 UNC5DQ6UXZ4 953 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 MAMDC2Q7Z304 686 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 GALNT15Q8N3T1 639 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 ZBTB8BQ8NAP8 495 aaPredicted RBP6.9□□□□□ -1.31
UPF2-203ENST00000397053 OR5P2Q8WZ92 322 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 HCAR1Q9BXC0 346 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 SYT4Q9H2B2 425 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 OR2S2Q9NQN1 319 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 ZNF358Q9NW07 568 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 DNAJB4Q9UDY4 337 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 MGAT4BQ9UQ53 548 aa6.9□□□□□ -1.31
UPF2-203ENST00000397053 MYO3AQ8NEV4 1616 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 EFCAB7A8K855 629 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 SASH3O75995 380 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 IFNA1P01562 189 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 DRD1P21728 446 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 GLDCP23378 1020 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 S100PP25815 95 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 GINS1Q14691 196 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 TGFBIQ15582 683 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 RAB11BQ15907 218 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 C3orf38Q5JPI3 329 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 DOK4Q8TEW6 326 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 ECHDC3Q96DC8 303 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 HSH2DQ96JZ2 352 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 IL17FQ96PD4 163 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 ARHGAP39Q9C0H5 1083 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 PCDHAC1Q9H158 963 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 FAM86C1Q9NVL1 165 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 PAK1IP1Q9NWT1 392 aaPredicted RBP6.89□□□□□ -1.31
UPF2-203ENST00000397053 RHCGQ9UBD6 479 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 ST14Q9Y5Y6 855 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 AP1M2Q9Y6Q5 423 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 RBBP9O75884 186 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 GJB5O95377 273 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 CER1O95813 267 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 LATS1O95835 1130 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 MT-CO2P00403 227 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 EPOP01588 193 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 IQCF3P0C7M6 154 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 CELP19835 753 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 DEFB110Q30KQ9 67 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 SH3D19Q5HYK7 790 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 KHDC1LQ5JSQ8 128 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 FIGNL1Q6PIW4 674 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 LCTLQ6UWM7 567 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 SLC16A9Q7RTY1 509 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 ZSWIM9Q86XI8 627 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 PDSS2Q86YH6 399 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 GID4Q8IVV7 300 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 UEVLDQ8IX04 471 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 OR9A2Q8NGT5 310 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 TXNDC15Q96J42 360 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 SMOQ99835 787 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 COQ10BQ9H8M1 238 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 MINDY3Q9H8M7 445 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 TXNRD2Q9NNW7 524 aa6.89□□□□□ -1.31
UPF2-203ENST00000397053 C2orf42Q9NWW7 574 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms