RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TUBB1Q9H4B7 451 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 VIPAS39Q9H9C1 493 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 ZNF223Q9UK11 482 aaPredicted RBP20.25■□□□□ 0.83
CLN3-207ENST00000395653 CES1P1Q9UKY3 287 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 CSAG2Q9Y5P2 127 aa20.25■□□□□ 0.83
CLN3-207ENST00000395653 SPENQ96T58 3664 aaKnown RBP20.25■□□□□ 0.83
CLN3-207ENST00000395653 TRBV11-1A0A0K0K1C0 115 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 TMEM233B4DJY2 109 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 DYRK3O43781 588 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 SNUPNO95149 360 aaKnown RBP20.24■□□□□ 0.83
CLN3-207ENST00000395653 DDAH2O95865 285 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 SLC35E2P0CK97 266 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 PIK3R1P27986 724 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 GALNSP34059 522 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 TLR1Q15399 786 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 HHATQ5VTY9 493 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 FCRLBQ6BAA4 426 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 RPS19BP1Q86WX3 136 aaKnown RBP20.24■□□□□ 0.83
CLN3-207ENST00000395653 Q8NA96 180 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 OR4K14Q8NGD5 310 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 OR1N1Q8NGS0 311 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 SLC2A12Q8TD20 617 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 TWIST2Q8WVJ9 160 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 SLAMF7Q9NQ25 335 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 ABI3Q9P2A4 366 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 DLGAP4Q9Y2H0 992 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 PTGDR2Q9Y5Y4 395 aa20.24■□□□□ 0.83
CLN3-207ENST00000395653 CDK2AP1O14519 115 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 OR10H2O60403 315 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 WDPCPO95876 746 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 ANXA4P09525 319 aaPredicted RBP20.23■□□□□ 0.83
CLN3-207ENST00000395653 DRD2P14416 443 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 SPRED3Q2MJR0 410 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 PLEKHN1Q494U1 663 aaPredicted RBP20.23■□□□□ 0.83
CLN3-207ENST00000395653 CES4AQ5XG92 561 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 Q6ZSR9 355 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 BEST3Q8N1M1 668 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 AGR3Q8TD06 166 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 C16orf78Q8WTQ4 265 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 PPWD1Q96BP3 646 aaKnown RBP20.23■□□□□ 0.83
CLN3-207ENST00000395653 ART5Q96L15 291 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 EBPLQ9BY08 206 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 OR8D2Q9GZM6 311 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 ILKAPQ9H0C8 392 aaPredicted RBP20.23■□□□□ 0.83
CLN3-207ENST00000395653 PLA2G3Q9NZ20 509 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 ZDHHC2Q9UIJ5 367 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 PSME2Q9UL46 239 aa20.23■□□□□ 0.83
CLN3-207ENST00000395653 OR5H15A6NDH6 313 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 HSPA4LO95757 839 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 IL3P08700 152 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 TNFSF10P50591 281 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 WDR4P57081 412 aaKnown RBP20.22■□□□□ 0.83
CLN3-207ENST00000395653 ABCE1P61221 599 aaKnown RBP20.22■□□□□ 0.83
CLN3-207ENST00000395653 ZNF763Q0D2J5 394 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 HEPACAMQ14CZ8 416 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 KIAA0040Q15053 153 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 DGAT2L6Q6ZPD8 337 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 MMP21Q8N119 569 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 OR2T11Q8NH01 316 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 ARL8AQ96BM9 186 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 FBXL20Q96IG2 436 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 PAIP2Q9BPZ3 127 aaKnown RBP20.22■□□□□ 0.83
CLN3-207ENST00000395653 CDCP1Q9H5V8 836 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 LRTM1Q9HBL6 345 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 C1orf109Q9NX04 203 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 NKIRAS1Q9NYS0 192 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 COPS7AQ9UBW8 275 aa20.22■□□□□ 0.83
CLN3-207ENST00000395653 WBP11Q9Y2W2 641 aaKnown RBP20.22■□□□□ 0.83
CLN3-207ENST00000395653 PIP5K1BO14986 540 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 ITM2AO43736 263 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 MAN1A2O60476 641 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 SEC22BO75396 215 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 LYPLA1O75608 230 aaPredicted RBP20.21■□□□□ 0.83
CLN3-207ENST00000395653 ZFAND5O76080 213 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 LINC00032P0C843 101 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 CPMP14384 443 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 BGNP21810 368 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 XKP51811 444 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 MLF1P58340 268 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 TLE1Q04724 770 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 ZNF169Q14929 603 aaPredicted RBP20.21■□□□□ 0.83
CLN3-207ENST00000395653 NR6A1Q15406 480 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 NOXRED1Q6NXP6 359 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 HSDL2Q6YN16 418 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 DDIASQ8IXT1 998 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 OR8K3Q8NH51 312 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 ZNF721Q8TF20 911 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 RIT1Q92963 219 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 SENP5Q96HI0 755 aaPredicted RBP20.21■□□□□ 0.83
CLN3-207ENST00000395653 CCT7Q99832 543 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 LUZP4Q9P127 313 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 HEY2Q9UBP5 337 aa20.21■□□□□ 0.83
CLN3-207ENST00000395653 POLR3HQ9Y535 204 aaPredicted RBP20.21■□□□□ 0.83
CLN3-207ENST00000395653 TRAV17A0A0B4J275 112 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 TTLL8A6PVC2 850 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 GABRR3A8MPY1 467 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 IGKV3-11P04433 115 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 PLA2G2AP14555 144 aa20.2■□□□□ 0.82
CLN3-207ENST00000395653 PORP16435 677 aaPredicted RBP20.2■□□□□ 0.82
CLN3-207ENST00000395653 ALDH9A1P49189 494 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms