RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PCDHGA12O60330 932 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 WBP4O75554 376 aaKnown RBP20.41■□□□□ 0.86
TRIM54-202ENST00000380075 GADD45GO95257 159 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 ZNF182P17025 639 aaPredicted RBP20.41■□□□□ 0.86
TRIM54-202ENST00000380075 KRT20P35900 424 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 DGKEP52429 567 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 ADPRMQ3LIE5 342 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 SLC38A5Q8WUX1 472 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 EXOSC8Q96B26 276 aaKnown RBP20.41■□□□□ 0.86
TRIM54-202ENST00000380075 LRFN3Q9BTN0 628 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 MKRN2Q9H000 416 aaKnown RBP20.41■□□□□ 0.86
TRIM54-202ENST00000380075 SLC6A17Q9H1V8 727 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 ACER3Q9NUN7 267 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 KCND3Q9UK17 655 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 GPSM3Q9Y4H4 160 aa20.41■□□□□ 0.86
TRIM54-202ENST00000380075 PRICKLE3O43900 615 aaPredicted RBP20.4■□□□□ 0.86
TRIM54-202ENST00000380075 CCNB2O95067 398 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 GABARAPO95166 117 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 TFPTP0C1Z6 253 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 CD6P30203 668 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 HSPB3Q12988 150 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 MOGQ16653 247 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 TSSK4Q6SA08 328 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 SLC16A12Q6ZSM3 486 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 FCGR1BQ92637 280 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 KCNC2Q96PR1 638 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 TEFMQ96QE5 360 aaKnown RBP20.4■□□□□ 0.86
TRIM54-202ENST00000380075 SIGLEC11Q96RL6 698 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 ABCG4Q9H172 646 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 XKR8Q9H6D3 395 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 KIR3DX1Q9H7L2 352 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 TEX10Q9NXF1 929 aaPredicted RBP20.4■□□□□ 0.86
TRIM54-202ENST00000380075 RNF6Q9Y252 685 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 SH3GLB1Q9Y371 365 aa20.4■□□□□ 0.86
TRIM54-202ENST00000380075 PRR23AA6NEV1 266 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 TMX2-CTNND1H3BSU7 103 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 SH3BP5O60239 455 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 BCHEP06276 602 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 TSFMP43897 325 aaKnown RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 CCT3P49368 545 aaKnown RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 ENTPD1P49961 510 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 SLC9A5Q14940 896 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 RPE65Q16518 533 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 ZNF829Q3KNS6 432 aaPredicted RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 FAM92BQ6ZTR7 304 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 MAML2Q8IZL2 1156 aaPredicted RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 SMYD1Q8NB12 490 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 SRFBP1Q8NEF9 429 aaKnown RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 TSTD1Q8NFU3 115 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 PHF10Q8WUB8 498 aaKnown RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 APOBEC4Q8WW27 367 aaKnown RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 APH1BQ8WW43 257 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 BORCS5Q969J3 196 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 TMEM19Q96HH6 336 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 ZNF607Q96SK3 696 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 CSF3RQ99062 836 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 DPH7Q9BTV6 452 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 POLMQ9NP87 494 aaPredicted RBP20.39■□□□□ 0.86
TRIM54-202ENST00000380075 COLEC10Q9Y6Z7 277 aa20.39■□□□□ 0.86
TRIM54-202ENST00000380075 K7ESF4 209 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 LAMTOR5O43504 91 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 MT-ND2P03891 347 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 CD247P20963 164 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 NTSP30990 170 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 BCL6P41182 706 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 ST13P50502 369 aaKnown RBP20.39■□□□□ 0.85
TRIM54-202ENST00000380075 NDUFAF5Q5TEU4 345 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 TNFAIP8L2Q6P589 184 aaPredicted RBP20.39■□□□□ 0.85
TRIM54-202ENST00000380075 DENND6BQ8NEG7 585 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 OR52J3Q8NH60 311 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 HMGB4Q8WW32 186 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 PROX1Q92786 737 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 ACOT13Q9NPJ3 140 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 NECTIN3Q9NQS3 549 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 RASSF1Q9NS23 344 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 MOSPD1Q9UJG1 213 aa20.39■□□□□ 0.85
TRIM54-202ENST00000380075 NUMA1Q14980 2115 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 SLC22A1O15245 554 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 LATO43561 262 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 BCAS1O75363 584 aaPredicted RBP20.38■□□□□ 0.85
TRIM54-202ENST00000380075 MFN2O95140 757 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 SERPIND1P05546 499 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 GABRG2P18507 467 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 NDUFS1P28331 727 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 CMPK1P30085 196 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 ANXA11P50995 505 aaKnown RBP20.38■□□□□ 0.85
TRIM54-202ENST00000380075 MAPK10P53779 464 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 KIAA1024LP59773 190 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 BNIP3Q12983 259 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 COLEC12Q5KU26 742 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 TMEM64Q6YI46 380 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 OR2L3Q8NG85 312 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 RHOXF1Q8NHV9 184 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 FAM81AQ8TBF8 368 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 MAPKAP1Q9BPZ7 522 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 C17orf62Q9BQA9 187 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 SLC35C2Q9NQQ7 365 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 P2RX2Q9UBL9 471 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 DGKBQ9Y6T7 804 aa20.38■□□□□ 0.85
TRIM54-202ENST00000380075 TBC1D3DA0A087WVF3 549 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms