RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NANOGNBQ7Z5D8 188 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 CACTIN-AS1Q8N1I8 211 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 FBXL6Q8N531 539 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 LGALS12Q96DT0 336 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 MYADMQ96S97 322 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 SLIRPQ9GZT3 109 aaKnown RBP12.68□□□□□ -0.38
CCDC3-202ENST00000378839 GLIPR2Q9H4G4 154 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 NECTIN3Q9NQS3 549 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 ANHXE9PGG2 379 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 K7EQS6 105 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 PGRMC2O15173 223 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 TBX19O60806 448 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 NADKO95544 446 aaPredicted RBP12.68□□□□□ -0.38
CCDC3-202ENST00000378839 BMP4P12644 408 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 RHCEP18577 417 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 BTBD1Q9H0C5 482 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 DDX31Q9H8H2 851 aaKnown RBP12.68□□□□□ -0.38
CCDC3-202ENST00000378839 SPHK1Q9NYA1 384 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 GDE1Q9NZC3 331 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 SPATA7Q9P0W8 599 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 REV1Q9UBZ9 1251 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 DPP7Q9UHL4 492 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 ERGIC3Q9Y282 383 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 TMA7Q9Y2S6 64 aaKnown RBP12.68□□□□□ -0.38
CCDC3-202ENST00000378839 HCN4Q9Y3Q4 1203 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 CKAP5Q14008 2032 aa12.68□□□□□ -0.38
CCDC3-202ENST00000378839 MYO15AQ9UKN7 3530 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 RFXAPO00287 272 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 SLC22A1O15245 554 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 CCNB2O95067 398 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 EML2O95834 649 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 OR12D1P0DN82 309 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 FEN1P39748 380 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ST13P50502 369 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ERVK-21P61565 698 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 PRDX1Q06830 199 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 GPR19Q15760 415 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 OR4C11Q6IEV9 310 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 PSD2Q9BQI7 771 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ANKRA2Q9H9E1 313 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 MS4A12Q9NXJ0 267 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 AHSPQ9NZD4 102 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 NINQ8N4C6 2090 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 HAT1O14929 419 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 PRICKLE3O43900 615 aaPredicted RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 GADD45AP24522 165 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 MAT2AP31153 395 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 TIE1P35590 1138 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 EIF2B2P49770 351 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 FUT5Q11128 374 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 UAP1L1Q3KQV9 507 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 NDUFAF5Q5TEU4 345 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 FAM46CQ5VWP2 391 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ADCK2Q7Z695 626 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 P3H2Q8IVL5 708 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 SHISA5Q8N114 240 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 VANGL1Q8TAA9 524 aaPredicted RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 RGMAQ96B86 450 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 VMP1Q96GC9 406 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 KCNK12Q9HB15 430 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 CCNB1IP1Q9NPC3 277 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 CD93Q9NPY3 652 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 OSGIN1Q9UJX0 560 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 DSPPQ9NZW4 1301 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ZAR1LA6NP61 321 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 NDUFB5O43674 189 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 IFNW1P05000 195 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ITGA2P17301 1181 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 CNR2P34972 360 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 IGFALSP35858 605 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 CCT3P49368 545 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 TMED10P49755 219 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 DMPKQ09013 629 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 TP53BP2Q13625 1128 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 HEPACAMQ14CZ8 416 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 AGERQ15109 404 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 TMEM53Q6P2H8 277 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 SYCE2Q6PIF2 218 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 NUDT13Q86X67 352 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 SVOPQ8N4V2 548 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 TMCO5AQ8N6Q1 288 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 B3GNT7Q8NFL0 401 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 PHF10Q8WUB8 498 aaKnown RBP12.67□□□□□ -0.38
CCDC3-202ENST00000378839 CHPT1Q8WUD6 406 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 AMDHD1Q96NU7 426 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ITPAQ9BY32 194 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 PBX4Q9BYU1 374 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 MVB12BQ9H7P6 319 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 OBP2AQ9NY56 170 aa12.67□□□□□ -0.38
CCDC3-202ENST00000378839 ADORA3P0DMS8 318 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 KIR2DL1P43626 348 aaPredicted RBP12.66□□□□□ -0.38
CCDC3-202ENST00000378839 LIMK1P53667 647 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 KCNC4Q03721 635 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 ST3GAL4Q11206 333 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 IRF3Q14653 427 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 ZIC1Q15915 447 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 OR52E1Q8NGJ3 308 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 PSMA8Q8TAA3 256 aa12.66□□□□□ -0.38
CCDC3-202ENST00000378839 TREX2Q9BQ50 279 aaPredicted RBP12.66□□□□□ -0.38
CCDC3-202ENST00000378839 YIPF4Q9BSR8 244 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms