RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CHURC1Q8WUH1 139 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 MRPL53Q96EL3 112 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF597Q96LX8 424 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 AGPAT1Q99943 283 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 XPO4Q9C0E2 1151 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 DDX47Q9H0S4 455 aaKnown RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TMEM245Q9H330 911 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 MTHFD2LQ9H903 347 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-206ENST00000376646 S100A14Q9HCY8 104 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 PIGVQ9NUD9 493 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 CTSZQ9UBR2 303 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 KLK11Q9UBX7 282 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TEKT2Q9UIF3 430 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 NUDCQ9Y266 331 aa1.73□□□□□ -2.13
VPS13A-206ENST00000376646 TRBV2A0A0J9YWF9 115 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 SH3PXD2BA1X283 911 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 CSO75390 466 aaKnown RBP1.72□□□□□ -2.13
VPS13A-206ENST00000376646 SEC22BO75396 215 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 ANGPTL1O95841 491 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 ALPPP05187 535 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 MMP10P09238 476 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 ALPPL2P10696 532 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 PCP11498 1178 aaKnown RBP1.72□□□□□ -2.13
VPS13A-206ENST00000376646 SELEP16581 610 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF18P17022 549 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 AOC1P19801 751 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 GPR183P32249 361 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 NSFP46459 744 aaKnown RBP1.72□□□□□ -2.13
VPS13A-206ENST00000376646 STARD6P59095 220 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 BPIFB3P59826 476 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 TSTA3Q13630 321 aaPredicted RBP1.72□□□□□ -2.13
VPS13A-206ENST00000376646 HEPACAMQ14CZ8 416 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 WSCD2Q2TBF2 565 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 C15orf32Q32M92 178 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 EPC2Q52LR7 807 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 EIPR1Q53HC9 387 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 OR6B2Q6IFH4 312 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 WDR88Q6ZMY6 472 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 ZNF841Q6ZN19 808 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 MIER3Q7Z3K6 550 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 WDR49Q8IV35 697 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 BATF2Q8N1L9 274 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 OR9Q2Q8NGE9 314 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 KIAA1524Q8TCG1 905 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 GLYATL1Q969I3 302 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 SLCO4A1Q96BD0 722 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 PCED1BQ96HM7 432 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 CDHR1Q96JP9 859 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 OVOL2Q9BRP0 275 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 NUSAP1Q9BXS6 441 aaKnown RBP1.72□□□□□ -2.13
VPS13A-206ENST00000376646 HEXA-AS1Q9H8Q6 139 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 UBE2TQ9NPD8 197 aaPredicted RBP1.72□□□□□ -2.13
VPS13A-206ENST00000376646 MED17Q9NVC6 651 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 NLGN3Q9NZ94 848 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 NINJ2Q9NZG7 142 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 FAM153AQ9UHL3 310 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 TSPAN16Q9UKR8 245 aa1.72□□□□□ -2.13
VPS13A-206ENST00000376646 BICDL2A1A5D9 508 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 SNAP91O60641 907 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 FGF19O95750 216 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 TXNDC12O95881 172 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 TPBGLP0DKB5 382 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 PRG2P13727 222 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 MYOGP15173 224 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 EDNRAP25101 427 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 SFNP31947 248 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 CAPGP40121 348 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 RABIFP47224 123 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 CCR4P51679 360 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 GEMP55040 296 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 OR1C1Q15619 314 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 TRADDQ15628 312 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 PARP10Q53GL7 1025 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 UMODL1Q5DID0 1318 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 CMPK2Q5EBM0 449 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 MFSD7Q6UXD7 560 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 ISLR2Q6UXK2 745 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 DLEU7Q6UYE1 221 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 CEACAM19Q7Z692 300 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 FAM131BQ86XD5 332 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 OR52B6Q8NGF0 335 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 C8orf46Q8TAG6 207 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 LIPHQ8WWY8 451 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 ESAMQ96AP7 390 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 S1PR3Q99500 378 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 FUNDC2Q9BWH2 189 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 WWP1Q9H0M0 922 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 SLC26A1Q9H2B4 701 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 CXXC4Q9H2H0 198 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 KCNK13Q9HB14 408 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 PLEKHA3Q9HB20 300 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 IL1RAPQ9NPH3 570 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 TECRQ9NZ01 308 aaKnown RBP1.71□□□□□ -2.13
VPS13A-206ENST00000376646 COPS7AQ9UBW8 275 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 TRIM10Q9UDY6 481 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 MRTO4Q9UKD2 239 aaKnown RBP1.71□□□□□ -2.13
VPS13A-206ENST00000376646 DNPEPQ9ULA0 475 aa1.71□□□□□ -2.13
VPS13A-206ENST00000376646 MRPS18CQ9Y3D5 142 aaKnown RBP1.71□□□□□ -2.13
VPS13A-206ENST00000376646 KIF7Q2M1P5 1343 aa1.71□□□□□ -2.14
VPS13A-206ENST00000376646 LOC105371242A0A075B767 164 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms