RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ARV1Q9H2C2 271 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ACKR4Q9NPB9 350 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ZFP57Q9NU63 452 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 FAIMQ9NVQ4 179 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MRPL22Q9NWU5 206 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MINPP1Q9UNW1 487 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ABCA4P78363 2273 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 A0A0B4J293 547 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 YJEFN3A6XGL0 299 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DNM1LO00429 736 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PAEPP09466 180 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 POU3F1Q03052 451 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GPR19Q15760 415 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GCNT6Q5T4J0 391 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TLDC1Q6P9B6 456 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 VWA1Q6PCB0 445 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 BTNL3Q6UXE8 466 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 FAM92BQ6ZTR7 304 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 BTLAQ7Z6A9 289 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CMTM1Q8IZ96 169 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GJD3Q8N144 294 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SVOPLQ8N434 492 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 POU5F2Q8N7G0 328 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GRAPLQ8TC17 118 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 BRIX1Q8TDN6 353 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SLC22A18Q96BI1 424 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 S100A16Q96FQ6 103 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 UHRF2Q96PU4 802 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ALG8Q9BVK2 526 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 OR8D2Q9GZM6 311 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PATZ1Q9HBE1 687 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 APEX2Q9UBZ4 518 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SCN2AQ99250 2005 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PLXNC1O60486 1568 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GLYATL1P3A0A0U1RQE8 302 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CLIC1O00299 241 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 ADAMTS4O75173 837 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DBHP09172 617 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SLC25A6P12236 298 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 UGT1A4P22310 534 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GLRA2P23416 452 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 AGTR1P30556 359 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GJA4P35212 333 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SNCAP37840 140 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MC3RP41968 323 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 VEGFCP49767 419 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SOX10P56693 466 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 BACE1P56817 501 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CD83Q01151 205 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 RAB11BQ15907 218 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 HLFQ16534 295 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 IQCJQ1A5X6 159 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 OR2B11Q5JQS5 317 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 NXNL2Q5VZ03 156 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 LRFN4Q6PJG9 635 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 C12orf29Q8N999 325 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 IFI44Q8TCB0 444 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TSNAXQ99598 290 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MENTQ9BUN1 341 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 DUSP16Q9BY84 665 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 NMNAT1Q9HAN9 279 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 INPP5EQ9NRR6 644 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 TAS2R9Q9NYW1 312 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 MTCH1Q9NZJ7 389 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 STAP2Q9UGK3 403 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 SCP2D1Q9UJQ7 156 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PRELID1Q9Y255 219 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 PCDHAC2Q9Y5I4 1007 aa4.47□□□□□ -1.69
SCN1A-202ENST00000375405 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 CFAP20Q9Y6A4 193 aaKnown RBP4.47□□□□□ -1.69
SCN1A-202ENST00000375405 KIAA0586Q9BVV6 1533 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 CACNA1BQ00975 2339 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 A0A0D9SG52 128 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 A0A1W2PPM1 405 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 TCRBV21S2A2A0A5A6 115 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 ELOVL7A1L3X0 281 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 MAGEB17A8MXT2 336 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 UBFD1O14562 309 aaKnown RBP4.46□□□□□ -1.69
SCN1A-202ENST00000375405 UGT2B4P06133 528 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 HTR1AP08908 422 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF28P17035 718 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 BMI1P35226 326 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 COILP38432 576 aaPredicted RBP4.46□□□□□ -1.69
SCN1A-202ENST00000375405 PON3Q15166 354 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 METTL2BQ6P1Q9 378 aaKnown RBP4.46□□□□□ -1.69
SCN1A-202ENST00000375405 SLCO6A1Q86UG4 719 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 BAGE3Q86Y29 109 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 BAGE2Q86Y30 109 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 NAGSQ8N159 534 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 PQLC1Q8N2U9 271 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 SLC13A3Q8WWT9 602 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 FAM46AQ96IP4 442 aaKnown RBP4.46□□□□□ -1.69
SCN1A-202ENST00000375405 THAP2Q9H0W7 228 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 KCNQ5Q9NR82 932 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 FBXO6Q9NRD1 293 aaPredicted RBP4.46□□□□□ -1.69
SCN1A-202ENST00000375405 ERVK13-1Q9NX77 482 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 TAS2R7Q9NYW3 318 aa4.46□□□□□ -1.69
SCN1A-202ENST00000375405 KIAA1522Q9P206 1035 aaPredicted RBP4.46□□□□□ -1.69
SCN1A-202ENST00000375405 CNTN3Q9P232 1028 aa4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms