RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PRSS38A1L453 326 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 FOXE1O00358 373 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 MANBAO00462 879 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CLGNO14967 610 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 LSM1O15116 133 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 TBX1O43435 398 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 MGRN1O60291 552 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 DNAJB5O75953 348 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 OR4F21O95013 312 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 SLC16A8O95907 504 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 EPORP19235 508 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CXCR2P25025 360 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CPOXP36551 454 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 PIK3CBP42338 1070 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 GSTM5P46439 218 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 RAB28P51157 221 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ARFIP1P53367 373 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 FOXA1P55317 472 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 RPL11P62913 178 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 PHEXP78562 749 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ABATP80404 500 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 MC2RQ01718 297 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 LRRC74AQ0VAA2 488 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 PRKG2Q13237 762 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 BIRC2Q13490 618 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ERV3-1Q14264 604 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 FASTKQ14296 549 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 C6orf136Q5SQH8 315 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 WASHC2DQ5SRD0 308 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 C6orf163Q5TEZ5 329 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 NKAIN2Q5VXU1 208 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 FRG2Q64ET8 278 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ATG9BQ674R7 924 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 NXNQ6DKJ4 435 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CLEC6AQ6EIG7 209 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 TMEM71Q6P5X7 295 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CYB5D1Q6P9G0 228 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 LCTLQ6UWM7 567 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ABRAXAS1Q6UWZ7 409 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ARPINQ7Z6K5 226 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 TRIM74Q86UV6 250 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 THOC6Q86W42 341 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 DDIASQ8IXT1 998 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 RBM12BQ8IXT5 1001 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CFAP206Q8IYR0 622 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 PGAM4Q8N0Y7 254 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CDYL2Q8N8U2 506 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 RBM15BQ8NDT2 890 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ZNF480Q8WV37 535 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 JADE3Q92613 823 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 TFGQ92734 400 aaPredicted RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 POP5Q969H6 163 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 FCRL1Q96LA6 429 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 FRG2BQ96QU4 278 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 MRPL1Q9BYD6 325 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 KRTAP3-1Q9BYR8 98 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 TWSG1Q9GZX9 223 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ELOVL6Q9H5J4 265 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 KIR3DX1Q9H7L2 352 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 EFCAB1Q9HAE3 211 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 PELI2Q9HAT8 420 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 APMAPQ9HDC9 416 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 BCAP29Q9UHQ4 241 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ENTPD4Q9Y227 616 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 EIF3LQ9Y262 564 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ASF1AQ9Y294 204 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 AP3M1Q9Y2T2 418 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 WBP11Q9Y2W2 641 aaKnown RBP6.6□□□□□ -1.35
VPS13A-201ENST00000355766 CCL27Q9Y4X3 112 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 GPR45Q9Y5Y3 372 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 X6R8D5 127 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 APCP25054 2843 aa6.6□□□□□ -1.35
VPS13A-201ENST00000355766 ANKRD12Q6UB98 2062 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 ARHGAP10A1A4S6 786 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 FAM234BA2RU67 622 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 LRRC14BA6NHZ5 514 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 OR5K4A6NMS3 321 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 B2RBV5 119 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 E7ENX8 843 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SEMA3DO95025 777 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CCNDBP1O95273 360 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SNRPB2P08579 225 aaKnown RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 PRPS2P11908 318 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 DDX5P17844 614 aaKnown RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 GPX3P22352 226 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 PDHA2P29803 388 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 DLSTP36957 453 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 BCL6P41182 706 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 HALP42357 657 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 GNPDA1P46926 289 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 PGDP52209 483 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CLNS1AP54105 237 aaKnown RBP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 TBPL1P62380 186 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 IRF8Q02556 426 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 TAP2Q03519 686 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 ILF3Q12906 894 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS13A-201ENST00000355766 NFE2L1Q14494 772 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CR1LQ2VPA4 569 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 SPIN4Q56A73 249 aa6.59□□□□□ -1.35
VPS13A-201ENST00000355766 CACHD1Q5VU97 1274 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms