RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 OR8K3Q8NH51 312 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 EMCNQ9ULC0 261 aa17.05■□□□□ 0.32
CLN3-202ENST00000355477 KLF13Q9Y2Y9 288 aaPredicted RBP17.05■□□□□ 0.32
CLN3-202ENST00000355477 ARHGAP10A1A4S6 786 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 PEX1O43933 1283 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 ZG16O60844 167 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 ALOX15P16050 662 aaPredicted RBP17.04■□□□□ 0.32
CLN3-202ENST00000355477 ATP5F1P24539 256 aaPredicted RBP17.04■□□□□ 0.32
CLN3-202ENST00000355477 COL8A1P27658 744 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 TNFRSF8P28908 595 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 RFC3P40938 356 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 SLCO1A2P46721 670 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 PRKAA2P54646 552 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 GPR85P60893 370 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 PLIN5Q00G26 463 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 KRTCAP3Q53RY4 240 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 TCHHL1Q5QJ38 904 aaPredicted RBP17.04■□□□□ 0.32
CLN3-202ENST00000355477 MAMDC2Q7Z304 686 aaPredicted RBP17.04■□□□□ 0.32
CLN3-202ENST00000355477 ST13P4Q8IZP2 240 aaPredicted RBP17.04■□□□□ 0.32
CLN3-202ENST00000355477 METTL4Q8N3J2 472 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 C7orf57Q8NEG2 295 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 UBLCP1Q8WVY7 318 aaPredicted RBP17.04■□□□□ 0.32
CLN3-202ENST00000355477 SELENOMQ8WWX9 145 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 ASB15Q8WXK1 588 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 HBEGFQ99075 208 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 COPS7AQ9UBW8 275 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 TRPS1Q9UHF7 1281 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 DCDC2Q9UHG0 476 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 ADAM29Q9UKF5 820 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 SLC12A4Q9UP95 1085 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 ERVK-11Q9UQG0 969 aa17.04■□□□□ 0.32
CLN3-202ENST00000355477 TRGV8A0A0C4DH27 118 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 A8MVJ9 347 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 ASNA1O43681 348 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 SLC19A2O60779 497 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 GSTA1P08263 222 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 PER3P56645 1201 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 HSF1Q00613 529 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 GALNT1Q10472 559 aaPredicted RBP17.03■□□□□ 0.32
CLN3-202ENST00000355477 TBL3Q12788 808 aaKnown RBP17.03■□□□□ 0.32
CLN3-202ENST00000355477 ZNF750Q32MQ0 723 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 CCNYL2Q5T2Q4 361 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 COMMD6Q7Z4G1 85 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 C9orf40Q8IXQ3 194 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 CDYL2Q8N8U2 506 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 OR5L2Q8NGL0 311 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 FBXL20Q96IG2 436 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 ANKZF1Q9H8Y5 726 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 DEPPQ9NTK1 212 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 HPF1Q9NWY4 346 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 AHSPQ9NZD4 102 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 SH3BGRL2Q9UJC5 107 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 SNX6Q9UNH7 406 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 ZNF835Q9Y2P0 537 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 FREM3P0C091 2139 aa17.03■□□□□ 0.32
CLN3-202ENST00000355477 NCOA6Q14686 2063 aaPredicted RBP17.03■□□□□ 0.32
CLN3-202ENST00000355477 NCKAP5O14513 1909 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 KLRC4-KLRK1H3BQV0 150 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 MANBAO00462 879 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 ZNF24P17028 368 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 CA7P43166 264 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 ERVK-8P63133 956 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 ASPHQ12797 758 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 ZNF267Q14586 743 aaPredicted RBP17.02■□□□□ 0.32
CLN3-202ENST00000355477 PIGGQ5H8A4 983 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 NDUFAF5Q5TEU4 345 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 GPRIN3Q6ZVF9 776 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 CHERPQ8IWX8 916 aaKnown RBP17.02■□□□□ 0.32
CLN3-202ENST00000355477 GPALPP1Q8IXQ4 340 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 PSD4Q8NDX1 1056 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 RIT1Q92963 219 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 L3HYPDHQ96EM0 354 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 ZNF382Q96SR6 550 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 CNPPD1Q9BV87 410 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 WDR41Q9HAD4 459 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 BRF2Q9HAW0 419 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 TIMMDC1Q9NPL8 285 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 ERVK-19Q9WJR5 959 aa17.02■□□□□ 0.32
CLN3-202ENST00000355477 EXPH5Q8NEV8 1989 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 A0A0G2JMM0 328 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 A0A1W2PPB8 328 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 A0A1W2PRS3 328 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 PINLYPA6NC86 204 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 SMIM23A6NLE4 172 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 KIR3DP1A8MWS1 328 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 G3V2L1 256 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 CCL21O00585 134 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 OR10H2O60403 315 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 MLYCDO95822 493 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 CLPSP04118 112 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 SLC35E2P0CK97 266 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 CHN1P15882 459 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 RBPJQ06330 500 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 RASA2Q15283 850 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 C3AR1Q16581 482 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 MPEG1Q2M385 716 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 SPRED3Q2MJR0 410 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.01■□□□□ 0.31
CLN3-202ENST00000355477 OR52E8Q6IFG1 317 aa17.01■□□□□ 0.31
CLN3-202ENST00000355477 PAGE2Q7Z2X7 111 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms