RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 ARNTL2Q8WYA1 636 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 CDCA5Q96FF9 252 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 AMBNQ9NP70 447 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 N4BP2Q86UW6 1770 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-202ENST00000347401 RHBDL3P58872 404 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 CHAF1BQ13112 559 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 CDNFQ49AH0 187 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 MINDY4Q4G0A6 757 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 TPGS2Q68CL5 300 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 TLDC1Q6P9B6 456 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 OR2AP1Q8NGE2 309 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 OR2T35Q8NGX2 323 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 ZNF587Q96SQ5 575 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-202ENST00000347401 SLC38A3Q99624 504 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 MYOCQ99972 504 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 SLC38A1Q9H2H9 487 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 BRF2Q9HAW0 419 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 TMLHEQ9NVH6 421 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 CYP8B1Q9UNU6 501 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 CPQQ9Y646 472 aa12.79□□□□□ -0.36
COL6A3-202ENST00000347401 TISP43B9A030 160 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 CLDN5O00501 218 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 VILLO15195 856 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 LYRM1O43325 122 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 RNF13O43567 381 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 AHSA1O95433 338 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 MT-CYBP00156 380 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 CHRNB1P11230 501 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 TMEM35AQ53FP2 167 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 HES5Q5TA89 166 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 PAQR3Q6TCH7 311 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 THOC6Q86W42 341 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 FOXRED2Q8IWF2 684 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 PYROXD2Q8N2H3 581 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ZNF419Q96HQ0 510 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ANKRD66B4E2M5 251 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 SLC2A5P22732 501 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 THBS2P35442 1172 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ASRGL1Q7L266 308 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 REM2Q8IYK8 340 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 FIBCD1Q8N539 461 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 CDKN2AIPNLQ96HQ2 116 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ATG10Q9H0Y0 220 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 PQBP1O60828 265 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 BCAS1O75363 584 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ATP1B2P14415 290 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 NKX3-2P78367 333 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 CRYZQ08257 329 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ITPK1Q13572 414 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 RNASE10Q5GAN6 216 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 MTFR2Q6P444 385 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 GPR149Q86SP6 731 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ZFAND4Q86XD8 727 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 STK35Q8TDR2 534 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 OR51I1Q9H343 314 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 SRA1Q9HD15 236 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 E7ESA3 106 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 MANBAO00462 879 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 CSF2P04141 144 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ACTR1AP61163 376 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ACTBL2Q562R1 376 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 AGAP6Q5VW22 663 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 PAPD4Q6PIY7 484 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 SLC22A25Q6T423 547 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 KIAA1324Q6UXG2 1013 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 RASGRP3Q8IV61 690 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 EID2Q8N6I1 236 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 NUS1Q96E22 293 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 AGAP4Q96P64 663 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 RANBP9Q96S59 729 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 PNO1Q9NRX1 252 aaKnown RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 SDHAF2Q9NX18 166 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 DNAJC27Q9NZQ0 273 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 TMEM150BA6NC51 233 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 C9J4A7 227 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ITGAMP11215 1152 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 IRF9Q00978 393 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ELP4Q96EB1 424 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 EPHA6Q9UF33 1036 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 UGDHO60701 494 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 OR8U9P0C7N5 309 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 MAGEA11P43364 429 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ERVK-21P61565 698 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 MFSD13AQ14CX5 517 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 DCST2Q5T1A1 773 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 VTCN1Q7Z7D3 282 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 OR5P2Q8WZ92 322 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 SLC25A31Q9H0C2 315 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 TMEM181Q9P2C4 612 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 WDR45Q9Y484 360 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 PRKCGP05129 697 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 WNT4P56705 351 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 GALNT2Q10471 571 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 USP50Q70EL3 339 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-202ENST00000347401 NAALAD2Q9Y3Q0 740 aa12.78□□□□□ -0.36
COL6A3-202ENST00000347401 ITGB5P18084 799 aa12.77□□□□□ -0.36
COL6A3-202ENST00000347401 SUOXP51687 545 aa12.77□□□□□ -0.36
COL6A3-202ENST00000347401 TPRA1Q86W33 373 aa12.77□□□□□ -0.36
COL6A3-202ENST00000347401 IFNL1Q8IU54 200 aa12.77□□□□□ -0.36
COL6A3-202ENST00000347401 OR56B4Q8NH76 319 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms