RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ZNF789Q5FWF6 425 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 MS4A15Q8N5U1 240 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 TMEM102Q8N9M5 508 aaPredicted RBP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 RHOXF1Q8NHV9 184 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 FBXL21Q9UKT6 434 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 LRP6O75581 1613 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 TMEM150CB9EJG8 249 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 ETFAP13804 333 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 NPR2P20594 1047 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 HMGCLP35914 325 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 EIF2S3P41091 472 aaKnown RBP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 ACTA2P62736 377 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 ACTG2P63267 376 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 AIMP2Q13155 320 aaKnown RBP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 GLT8D1Q68CQ7 371 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 FAM198BQ6UWH4 519 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 C6orf120Q7Z4R8 191 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 CYB5D2Q8WUJ1 264 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 C17orf62Q9BQA9 187 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 TBL1XR1Q9BZK7 514 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 DPEP2Q9H4A9 486 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 TXNRD2Q9NNW7 524 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 LOC100509620A0A075B734 347 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 SCAMP1O15126 338 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 SMAD9O15198 467 aaKnown RBP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 KMOO15229 486 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 GGT2P36268 569 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 AFF1P51825 1210 aaKnown RBP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 SELENOWP63302 87 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 ATXN7L3Q14CW9 347 aaPredicted RBP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 RGNQ15493 299 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 MAPK14Q16539 360 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 PLAG1Q6DJT9 500 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 GALNT10Q86SR1 603 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 FOXRED2Q8IWF2 684 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 CNTN4Q8IWV2 1026 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 CMTM8Q8IZV2 173 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 POGLUT1Q8NBL1 392 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 NSMAFQ92636 917 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 ABCD2Q9UBJ2 740 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 SLC45A1Q9Y2W3 748 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 CICQ96RK0 1608 aaPredicted RBP12.3□□□□□ -0.44
COL3A1-201ENST00000304636 CLDN24A6NM45 220 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 SCDO00767 359 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 CDK1P06493 297 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 HSD11B1P28845 292 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 SERPINA11Q86U17 422 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 INPP5KQ9BT40 448 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 POTEKPQ9BYX7 375 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 MMP28Q9H239 520 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 TMEM185BQ9H7F4 350 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 ACSL6Q9UKU0 697 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 PLAGL1Q9UM63 463 aa12.3□□□□□ -0.44
COL3A1-201ENST00000304636 TEX13CA0A0J9YWL9 993 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 F5H0A9 414 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 BLOC1S5-TXNDC5H3BN57 136 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 NDUFV2P19404 249 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 MAT2AP31153 395 aaKnown RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 C18orf21Q32NC0 220 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 ZNF648Q5T619 568 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 CPZQ66K79 652 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 FAM217AQ8IXS0 508 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 TRAM1L1Q8N609 369 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 CASTOR1Q8WTX7 329 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 CCDC120Q96HB5 630 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 OR51E2Q9H255 320 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 CARS2Q9HA77 564 aaKnown RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 VAPAQ9P0L0 249 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 EIF3FO00303 357 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 SCGB1D2O95969 90 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 PAHP00439 452 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 ZNF8P17098 575 aaPredicted RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 GKP32189 559 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 PYCR1P32322 319 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 KCNJ8Q15842 424 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 METTL2BQ6P1Q9 378 aaKnown RBP12.29□□□□□ -0.44
COL3A1-201ENST00000304636 Q6ZVL8 140 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 SPRED1Q7Z699 444 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 TBC1D15Q8TC07 691 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 MUL1Q969V5 352 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 C16orf70Q9BSU1 422 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 EMC3Q9P0I2 261 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 A0A1B0GVI7 797 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 PCDHGA12O60330 932 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 SOX30O94993 753 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 LAMP1P11279 417 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 ACTR1BP42025 376 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 WNT4P56705 351 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 ACTR1AP61163 376 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 BCL2L15Q5TBC7 163 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 FTMTQ8N4E7 242 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 ZFP41Q8N8Y5 198 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 OR8K5Q8NH50 307 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 ACTL8Q9H568 366 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 AP1M2Q9Y6Q5 423 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 EDDM13A0A1B0GTR0 161 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 TSPAN6O43657 245 aa12.29□□□□□ -0.44
COL3A1-201ENST00000304636 RFPL3O75679 317 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms