RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ADAM23O75077 832 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 ARAFP10398 606 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 CERS1P27544 350 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 GGT2P36268 569 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 EEF1A1P68104 462 aaKnown RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 ZNF177Q13360 481 aaPredicted RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 TUSC3Q13454 348 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 CCL15Q16663 113 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 EEF1A1P5Q5VTE0 462 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 KDM4DQ6B0I6 523 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 ZNF565Q8N9K5 539 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 TP63Q9H3D4 680 aaPredicted RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 FAM83DQ9H4H8 585 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 MAN2C1Q9NTJ4 1040 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 ABI2Q9NYB9 513 aaPredicted RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 GPRC5BQ9NZH0 403 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 ASH2LQ9UBL3 628 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 MGAT4CQ9UBM8 478 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 EXOSC1Q9Y3B2 195 aaKnown RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 CMAHPQ9Y471 501 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 NME7Q9Y5B8 376 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 PCDHB5Q9Y5E4 795 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 BET1O15155 118 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 OR10H2O60403 315 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 AOC2O75106 756 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 EDN1P05305 212 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 SERPINA7P05543 415 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 ITPKBP27987 946 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 PEX6Q13608 980 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 GALEQ14376 348 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 KCTD19Q17RG1 926 aaPredicted RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 ALKAL1Q6UXT8 129 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 PROKR2Q8NFJ6 384 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 OR4C5Q8NGB2 326 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 NECAB3Q96P71 396 aaPredicted RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 ASAH2Q9NR71 780 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 VNN3Q9NY84 501 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 TAS2R9Q9NYW1 312 aa6.15□□□□□ -1.43
VPS35-201ENST00000299138 UXTQ9UBK9 157 aaPredicted RBP6.15□□□□□ -1.43
VPS35-201ENST00000299138 TNFRSF11BO00300 401 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 IGLV3-25P01717 112 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 HLA-DPB1P04440 258 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PET100P0DJ07 73 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 TFPIP10646 304 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ACADMP11310 421 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 BMP4P12644 408 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GPX2P18283 190 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PRKACGP22612 351 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DNASE1P24855 282 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DPP6P42658 865 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CHRNA4P43681 627 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PDX1P52945 283 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 OR4D2P58180 307 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PUM1Q14671 1186 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS35-201ENST00000299138 CLINT1Q14677 625 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ATPAF1Q5TC12 328 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 CBLL1Q75N03 491 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PYROXD2Q8N2H3 581 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 TSTD1Q8NFU3 115 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 POLR2J2Q9GZM3 115 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 TCEAL2Q9H3H9 227 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 CDC7O00311 574 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SOX30O94993 753 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SPDEFO95238 335 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PAK4O96013 591 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 CDK1P06493 297 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 OR56A5P0C7T3 313 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 APLP1P51693 650 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GTF2A2P52657 109 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 FAHD1Q6P587 224 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 PROKR1Q8TCW9 393 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SMPDL3BQ92485 455 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ZDHHC12Q96GR4 267 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SCGB3A2Q96PL1 93 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ZNF607Q96SK3 696 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 MKRN2Q9H000 416 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 FN3KQ9H479 309 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CRTAC1Q9NQ79 661 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 MRPL22Q9NWU5 206 aaKnown RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 SPIN1Q9Y657 262 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 PRRG1O14668 218 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SLC43A1O75387 559 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 EPCAMP16422 314 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 CXCR2P25025 360 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 GABRB3P28472 473 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ACTA2P62736 377 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ACTG2P63267 376 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ACTC1P68032 377 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ACTA1P68133 377 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 DBPQ10586 325 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 DUSP7Q16829 419 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 HIST2H3PS2Q5TEC6 136 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SLC2A7Q6PXP3 512 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 WASH2PQ6VEQ5 465 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SLC43A2Q8N370 569 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 SPATA6LQ8N4H0 392 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 TMEM185AQ8NFB2 350 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ADAMTS14Q8WXS8 1223 aa6.14□□□□□ -1.43
VPS35-201ENST00000299138 ZNF419Q96HQ0 510 aaPredicted RBP6.14□□□□□ -1.43
VPS35-201ENST00000299138 TMEM106CQ9BVX2 250 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms