RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PRPS1L1P21108 318 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 ARHGDIBP52566 201 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 SCARB2Q14108 478 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 UPP1Q16831 310 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 ZNF385BQ569K4 471 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 CMTM7Q96FZ5 175 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 PIP5K1AQ99755 562 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 MGME1Q9BQP7 344 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 ARHGAP39Q9C0H5 1083 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.83□□□□□ -0.36
SKA3-201ENST00000298260 UBQLN2Q9UHD9 624 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 KCNMB2Q9Y691 235 aa12.83□□□□□ -0.36
SKA3-201ENST00000298260 A0A1W2PRG6 482 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 TRBC2A0A5B9 178 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 C1orf226A1L170 272 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 PIPSLA2A3N6 862 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 EEF1E1O43324 174 aaKnown RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 RGS4P49798 205 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 CCR6P51684 374 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 HBA1P69905 142 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 MC1RQ01726 317 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 PCDH1Q08174 1060 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 MBTPS1Q14703 1052 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 SF3A2Q15428 464 aaKnown RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 KLHL12Q53G59 568 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 ALG1LQ6GMV1 187 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 ATRAIDQ6UW56 229 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 RTL4Q6ZR62 310 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 C17orf107Q6ZR85 190 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 USP45Q70EL2 814 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 PIAS4Q8N2W9 510 aaPredicted RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 CARNMT1Q8N4J0 409 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 ZBTB2Q8N680 514 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 LMNTD1Q8N9Z9 388 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 PROKR2Q8NFJ6 384 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 TTLQ8NG68 377 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 LILRB1Q8NHL6 650 aaPredicted RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 FOXJ1Q92949 421 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 CIDECQ96AQ7 238 aaPredicted RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 ACBD6Q9BR61 282 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 CHIAQ9BZP6 476 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 CLEC4MQ9H2X3 399 aaPredicted RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 WASH6PQ9NQA3 447 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 NLGN3Q9NZ94 848 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 EXTL2Q9UBQ6 330 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 REV1Q9UBZ9 1251 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 PCDHGB7Q9Y5F8 929 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 MYO16Q9Y6X6 1858 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 SNAI1O95863 264 aaPredicted RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 LGI1O95970 557 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 PLATP00750 562 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 HLA-DQB1P01920 261 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 CD22P20273 847 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 SLC6A4P31645 630 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 XCR1P46094 333 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 GSTM5P46439 218 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 MVDP53602 400 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 IER5LQ5T953 404 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 LRFN4Q6PJG9 635 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 CASP12Q6UXS9 341 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 C16orf59Q7L2K0 433 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 NR2C2APQ86WQ0 139 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 GPRC5AQ8NFJ5 357 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 MYO19Q96H55 970 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 HHIPQ96QV1 700 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 PKMYT1Q99640 499 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 MAPKAP1Q9BPZ7 522 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 SOSTQ9BQB4 213 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 TMEM161AQ9NX61 479 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 ZNF624Q9P2J8 865 aaPredicted RBP12.82□□□□□ -0.36
SKA3-201ENST00000298260 ATP6V1HQ9UI12 483 aa12.82□□□□□ -0.36
SKA3-201ENST00000298260 SAP18O00422 153 aaKnown RBP12.81□□□□□ -0.36
SKA3-201ENST00000298260 SYN3O14994 580 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 ZNF623O75123 536 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 ODC1P11926 461 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 PEPDP12955 493 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 SGSHP51688 502 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 CHIT1Q13231 466 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 PUM1Q14671 1186 aaKnown RBP eCLIP12.81□□□□□ -0.36
SKA3-201ENST00000298260 ZSWIM7Q19AV6 140 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 CPTPQ5TA50 214 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 PDE4DIPQ5VU43 2346 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 RAET1GQ6H3X3 334 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 TMEM107Q6UX40 140 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 OLIG3Q7RTU3 272 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 DDX53Q86TM3 631 aaKnown RBP12.81□□□□□ -0.36
SKA3-201ENST00000298260 LINC00518Q8N0U6 118 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 C1orf52Q8N6N3 182 aaKnown RBP12.81□□□□□ -0.36
SKA3-201ENST00000298260 LRR1Q96L50 414 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 ADGRE3Q9BY15 652 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 CCSER2Q9H7U1 834 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 NKIRAS2Q9NYR9 191 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 MARCH2Q9P0N8 246 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 SPATA2Q9UM82 520 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 IGLV3-10A0A075B6K4 115 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 KCNE1BA0A087WTH5 132 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 BET1O15155 118 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 SLC25A27O95847 323 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 DRD5P21918 477 aa12.81□□□□□ -0.36
SKA3-201ENST00000298260 DGKAP23743 735 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms