RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ADAMTS3O15072 1205 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TREHO43280 583 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 UGDHO60701 494 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 AK1P00568 194 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CLCNKBP51801 687 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BDH1Q02338 343 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 PUM1Q14671 1186 aaKnown RBP eCLIP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ABRAXAS2Q15018 415 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 HLA-DQA1Q5Y7H0 255 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CPZQ66K79 652 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 C1orf94Q6P1W5 598 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF676Q8N7Q3 588 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 HRASLS5Q96KN8 279 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 WDFY2Q96P53 400 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 KCNC2Q96PR1 638 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 SEMA3CQ99985 751 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BHLHE41Q9C0J9 482 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ATG5Q9H1Y0 275 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 DUSP21Q9H596 190 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 VPS29Q9UBQ0 182 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TRAV6A0A075B6T7 132 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM200CA6NKL6 621 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GPR182O15218 404 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CASC3O15234 703 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 HOXC11O43248 304 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 LILRB5O75023 590 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ATG13O75143 517 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ECI2O75521 394 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FGF7P21781 194 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 GALP22466 123 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 TAS2R19P59542 299 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 RAPSNQ13702 412 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FAM46CQ5VWP2 391 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 LETMD1Q6P1Q0 360 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ZDHHC14Q8IZN3 488 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 AGBL3Q8NEM8 1001 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 OR5T3Q8NGG3 340 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 BORCS6Q96GS4 357 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CDKN2AIPNLQ96HQ2 116 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 CELF6Q96J87 481 aaKnown RBP4.49□□□□□ -1.69
SCN1A-220ENST00000641603 KXD1Q9BQD3 176 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 ASAH2Q9NR71 780 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 FZD10Q9ULW2 581 aa4.49□□□□□ -1.69
SCN1A-220ENST00000641603 LINC00862A6NCI5 91 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CXorf49A8MYA2 514 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ACOT8O14734 319 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MMP20O60882 483 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PER3P56645 1201 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM132BQ14DG7 1078 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PIGZQ86VD9 579 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 VSIG10LQ86VR7 867 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MON1AQ86VX9 555 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 C15orf54Q8N8G6 183 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 C12orf29Q8N999 325 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 DBF4BQ8NFT6 615 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF417Q8TAU3 575 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 HERVK_113Q902F9 699 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TRIM43Q96BQ3 446 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 LRRC46Q96FV0 321 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 AARSD1Q9BTE6 412 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ACTRT3Q9BYD9 372 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CNTNAP3Q9BZ76 1288 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SH2B3Q9UQQ2 575 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 LACTBL1A8MY62 500 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 M0R2N6 131 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MAGEB4O15481 346 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 FFAR2O15552 330 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ASGR1P07306 291 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CNR1P21554 472 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 MC4RP32245 332 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PCGF2P35227 344 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CLDN8P56748 225 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CDK3Q00526 305 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 GALNT2Q10471 571 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 BOP1Q14137 746 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 DOK7Q18PE1 504 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PRPF38BQ5VTL8 546 aaKnown RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 WDR88Q6ZMY6 472 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 C12orf40Q86WS4 652 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 NLGN2Q8NFZ4 835 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 PCYT2Q99447 389 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SORT1Q99523 831 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 GPR21Q99679 349 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SLC30A3Q99726 388 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 SLC32A1Q9H598 525 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF219Q9P2Y4 722 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 ARGFXA6NJG6 315 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 OR2AG2A6NM03 316 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 OR7A17O14581 309 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 FABP7O15540 132 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TXNL1O43396 289 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 DDX6P26196 483 aaKnown RBP eCLIP4.48□□□□□ -1.69
SCN1A-220ENST00000641603 HTR1BP28222 390 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 STC1P52823 247 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CDONQ4KMG0 1287 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 UBE2NLQ5JXB2 153 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 LIPKQ5VXJ0 399 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 TNS2Q63HR2 1409 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 C22orf42Q6IC83 251 aa4.48□□□□□ -1.69
SCN1A-220ENST00000641603 CILP2Q8IUL8 1156 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms