RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	GLIPR1L2	Q4G1C9	344 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	AASDH	Q4L235	1098 aa	Predicted RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	PHF19	Q5T6S3	580 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	CYB5D1	Q6P9G0	228 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	C10orf67	Q8IYJ2	551 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	TNIP2	Q8NFZ5	429 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	OR5T3	Q8NGG3	340 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	PSMA8	Q8TAA3	256 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	WDR60	Q8WVS4	1066 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	CCDC124	Q96CT7	223 aa	Known RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ASB9	Q96DX5	294 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	MMAB	Q96EY8	250 aa	Predicted RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF583	Q96ND8	569 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	AMDHD1	Q96NU7	426 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	KCTD14	Q9BQ13	255 aa	Predicted RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	TRIM8	Q9BZR9	551 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	MUC13	Q9H3R2	512 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ALG2	Q9H553	416 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	KAT8	Q9H7Z6	458 aa	Known RBP	11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	TPT1P8	Q9HAU6	139 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	PARD6A	Q9NPB6	346 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	RXFP3	Q9NSD7	469 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	CLCA2	Q9UQC9	943 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	ENTPD4	Q9Y227	616 aa		11.1	□□□□□ -0.63
CLN6-223	ENST00000637823	KIF26B	Q2KJY2	2108 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	OTOGL	Q3ZCN5	2332 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	FER1L5	A0AVI2	2057 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	NUP210L	Q5VU65	1888 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	WASHC1	A8K0Z3	465 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823		A8MUI8	341 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	FAM227A	F5H4B4	570 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	ACOT8	O14734	319 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	DSCR3	O14972	297 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	BCAS2	O75934	225 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	STAMBP	O95630	424 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	KRT75	O95678	551 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	GPR75	O95800	540 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	ABCB1	P08183	1280 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	TCN1	P20061	433 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	TGM1	P22735	817 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	HTR1E	P28566	365 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	PPP2R1B	P30154	601 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	CSTF2	P33240	577 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	MSX2	P35548	267 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	XK	P51811	444 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	ACTR3	P61158	418 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	MS4A2	Q01362	244 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	ABHD18	Q0P651	414 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	TTLL10	Q6ZVT0	673 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF551	Q7Z340	670 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	CALHM3	Q86XJ0	350 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	PTRH1	Q86Y79	214 aa	Known RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	FAM156A	Q8NDB6	213 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	RCBTB1	Q8NDN9	531 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	ZFP90	Q8TF47	636 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	FAM120B	Q96EK7	910 aa	Known RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	CNRIP1	Q96F85	164 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	AURKB	Q96GD4	344 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	ZNF681	Q96N22	645 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	OR6C1	Q96RD1	312 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	CSF3R	Q99062	836 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	DPH2	Q9BQC3	489 aa	Predicted RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	GLIPR2	Q9H4G4	154 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	RAD21L1	Q9H4I0	556 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	IKZF5	Q9H5V7	419 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	NEUROD4	Q9HD90	331 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	SLAMF7	Q9NQ25	335 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	SIDT1	Q9NXL6	827 aa	Known RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	RARRES3	Q9UL19	164 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	SRPK3	Q9UPE1	567 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	MRPS33	Q9Y291	106 aa	Known RBP	11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	PCDHB3	Q9Y5E6	796 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	CCDC88C	Q9P219	2028 aa		11.09	□□□□□ -0.63
CLN6-223	ENST00000637823	TMX2-CTNND1	H3BSU7	103 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	HBQ1	P09105	142 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	POR	P16435	677 aa	Predicted RBP	11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	ALAS2	P22557	587 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	CHI3L1	P36222	383 aa	Predicted RBP	11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	FEN1	P39748	380 aa	Known RBP	11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	NCBP2	P52298	156 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	SIM1	P81133	766 aa	Predicted RBP	11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	SHC2	P98077	582 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	HSPB3	Q12988	150 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	FLOT2	Q14254	428 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	IL11RA	Q14626	422 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	FAM180B	Q6P0A1	224 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	RBM44	Q6ZP01	1051 aa	Known RBP	11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	MED25	Q71SY5	747 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	SERPINA11	Q86U17	422 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	IFNE	Q86WN2	208 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	DHFR2	Q86XF0	187 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	PROSER1	Q86XN7	944 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	ZNF595	Q8IYB9	648 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	CCDC116	Q8IYX3	515 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	LRRC25	Q8N386	305 aa	Predicted RBP	11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	AGBL5	Q8NDL9	886 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	OR10A6	Q8NH74	314 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	SLC35A5	Q9BS91	424 aa		11.08	□□□□□ -0.64
CLN6-223	ENST00000637823	SPATA9	Q9BWV2	254 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms