RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CTBP2P56545 445 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 ST8SIA6P61647 398 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 POU6F2P78424 691 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 HSF2Q03933 536 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 MAP4K2Q12851 820 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 CLPPQ16740 277 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 SLC5A12Q1EHB4 618 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 ZNF852Q6ZMS4 543 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 RFLNAQ6ZTI6 216 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 RIT1Q92963 219 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 RFT1Q96AA3 541 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 TESCQ96BS2 214 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 ST6GAL2Q96JF0 529 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 MAGEB10Q96LZ2 347 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 SECISBP2Q96T21 854 aaKnown RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 WRAP53Q9BUR4 548 aaKnown RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 GTPBP2Q9BX10 602 aaKnown RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 MGAT4BQ9UQ53 548 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 SNX11Q9Y5W9 270 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 TRBV4-1A0A0J9YWV2 114 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 GLOD5A6NK44 160 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 COCHO43405 550 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 ATP1B2P14415 290 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 CBLP22681 906 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 TIA1P31483 386 aaKnown RBP eCLIP10.54□□□□□ -0.72
CLN3-244ENST00000636147 SMSP52788 366 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 RGS8P57771 180 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 COL16A1Q07092 1604 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 AKIRIN2Q53H80 203 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 SPIN4Q56A73 249 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 GARNL3Q5VVW2 1013 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 SLC30A8Q8IWU4 369 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 KRT78Q8N1N4 520 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 LSM14AQ8ND56 463 aaKnown RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 BRI3BPQ8WY22 251 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 ERMAPQ96PL5 475 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 TXNL4BQ9NX01 149 aaKnown RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 HCN3Q9P1Z3 774 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 SRRDQ9UH36 339 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 PFDN2Q9UHV9 154 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 SDK1Q7Z5N4 2213 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 A0A1B0GW55 424 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 PRMT3O60678 531 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 IL3P08700 152 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DUX4L2P0CJ85 424 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DUX4L3P0CJ86 424 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DUX4L4P0CJ87 422 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DUX4L5P0CJ88 424 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DUX4L6P0CJ89 424 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DUX4L7P0CJ90 424 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 OSMP13725 252 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 GPX2P18283 190 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 EPHB3P54753 998 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 GALK2Q01415 458 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DEFA5Q01523 94 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 MTAPQ13126 283 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 MBTPS1Q14703 1052 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 TXNDC8Q6A555 127 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 CCSAPQ6IQ19 270 aaPredicted RBP10.54□□□□□ -0.72
CLN3-244ENST00000636147 HSDL2Q6YN16 418 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 ZNF366Q8N895 744 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 OR2T35Q8NGX2 323 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 COQ8AQ8NI60 647 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 USP7Q93009 1102 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 RIPOR3Q96MK2 946 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 CACNG6Q9BXT2 260 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 ZNF226Q9NYT6 803 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 NPAP1Q9NZP6 1156 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 CFAP97Q9P2B7 532 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 DUX4Q9UBX2 424 aa10.54□□□□□ -0.72
CLN3-244ENST00000636147 MYO9BQ13459 2157 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 FAM170BA6NMN3 283 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 M0R3H8 397 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 TNFRSF10BO14763 440 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SLC16A8O95907 504 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 IGLV3-25P01717 112 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SRPRAP08240 638 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 GATMP50440 423 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 FAM110CQ1W6H9 321 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 NCEH1Q6PIU2 408 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 MACC1Q6ZN28 852 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 GET4Q7L5D6 327 aaPredicted RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 LINGO2Q7L985 606 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 DEFB128Q7Z7B8 93 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 CCDC190Q86UF4 302 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 NLRP8Q86W28 1048 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 KLHL36Q8N4N3 616 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SPERTQ8NA61 448 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 GPR26Q8NDV2 337 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 OR7G3Q8NG95 312 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 OR52L1Q8NGH7 329 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 RFKQ969G6 155 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 GINS4Q9BRT9 223 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 KCNN2Q9H2S1 579 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 TNFRSF10DQ9UBN6 386 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 NDRG2Q9UN36 371 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 RWDD3Q9Y3V2 267 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 CFAP20Q9Y6A4 193 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 DAPL1A0PJW8 107 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 MYADML2A6NDP7 307 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms