RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 KCNK12Q9HB15 430 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SIRT3Q9NTG7 399 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 SELENONQ9NZV5 590 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 TRPC4Q9UBN4 977 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SLC17A4Q9Y2C5 497 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 FRYLO94915 3013 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 C5orf58C9J3I9 102 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 CACNB4O00305 520 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 RECKO95980 971 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 OR12D1P0DN82 309 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 CTHP32929 405 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 KRT20P35900 424 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 FEN1P39748 380 aaKnown RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 CCT3P49368 545 aaKnown RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 GP2P55259 537 aaKnown RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 FADDQ13158 208 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SYPL1Q16563 259 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 ZC3H12BQ5HYM0 836 aaKnown RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 C18orf63Q68DL7 685 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 GTF2IRD2BQ6EKJ0 949 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 FAHD1Q6P587 224 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 IKBIPQ70UQ0 350 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 WDR53Q7Z5U6 358 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 GTF2IRD2Q86UP8 949 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 ENTHD1Q8IYW4 607 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 CCDC116Q8IYX3 515 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 DOK4Q8TEW6 326 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 MTERF3Q96E29 417 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SPATA9Q9BWV2 254 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 SERHL2Q9H4I8 314 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 TMEM38AQ9H6F2 299 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 TRPV5Q9NQA5 729 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 CTPS2Q9NRF8 586 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 RABL2AQ9UBK7 228 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 ATG4BQ9Y4P1 393 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 FAM20BO75063 409 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 WBP4O75554 376 aaKnown RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 ARAFP10398 606 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 PCMT1P22061 227 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 CERS1P27544 350 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 HSD17B2P37059 387 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 DUSP2Q05923 314 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 MAD2L1BPQ15013 274 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 GPR19Q15760 415 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 LEXMQ3ZCV2 418 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 ANKDD1AQ495B1 522 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 ZNF542PQ5EBM4 170 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 KIAA1161Q6NSJ0 714 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 RAB42Q8N4Z0 105 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 KCT2Q8NC54 265 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 OR2L3Q8NG85 312 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 APH1BQ8WW43 257 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 OR1E3Q8WZA6 343 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 TANKQ92844 425 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 CDCA3Q99618 268 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 EPYCQ99645 322 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 APOL4Q9BPW4 351 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 TMEM168Q9H0V1 697 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 GLIPR2Q9H4G4 154 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 EPS8L2Q9H6S3 715 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 GALNT8Q9NY28 637 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 PCDHGA6Q9Y5G7 932 aa10.08□□□□□ -0.8
CUX1-221ENST00000622516 DNMT3AQ9Y6K1 912 aaPredicted RBP10.08□□□□□ -0.8
CUX1-221ENST00000622516 PRSS38A1L453 326 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PRAMEF27A3QJZ7 478 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 BTN3A3O00478 584 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 HMGN4O00479 90 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 FFAR1O14842 300 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 SEMA7AO75326 666 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 CCNA2P20248 432 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 POU1F1P28069 291 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 C21orf33P30042 268 aaPredicted RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 NCBP2P52298 156 aaKnown RBP eCLIP10.07□□□□□ -0.82e-6■■□□□ 13
CUX1-221ENST00000622516 LIM2P55344 173 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PCBP4P57723 403 aaKnown RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 HYAL2Q12891 473 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 AQP6Q13520 282 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 SPCS2Q15005 226 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 ZNF630Q2M218 657 aaPredicted RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 REEP3Q6NUK4 255 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 FAR1Q8WVX9 515 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 DNASE1L2Q92874 299 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 TBC1D20Q96BZ9 403 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PCBD2Q9H0N5 130 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 QRSL1Q9H0R6 528 aaKnown RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 ACER3Q9NUN7 267 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 ANGPT4Q9Y264 503 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 FAM32AQ9Y421 112 aaKnown RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 PCDHGA10Q9Y5H3 936 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 A0A1W2PR48 441 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 ANHXE9PGG2 379 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 ADAMDEC1O15204 470 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 NOL3O60936 208 aaKnown RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 SEMA3DO95025 777 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 MT-ND2P03891 347 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 IGFBP1P08833 259 aaPredicted RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 PSMB9P28065 219 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PKLRP30613 574 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms