RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 LRFN3Q9BTN0 628 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 CHST8Q9H2A9 424 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 RPF2Q9H7B2 306 aaKnown RBP13.45□□□□□ -0.26
USP39-220ENST00000613444 ACTR3BQ9P1U1 418 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 CUL9Q8IWT3 2517 aa13.45□□□□□ -0.26
USP39-220ENST00000613444 FAM227AF5H4B4 570 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 ARPC2O15144 300 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 CHST10O43529 356 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 B4GALT2O60909 372 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 PSMG1O95456 288 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 CDK9P50750 372 aaKnown RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 RAB38P57729 211 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 SIM1P81133 766 aaPredicted RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 SHC2P98077 582 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 ABHD18Q0P651 414 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 TMTC4Q5T4D3 741 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 OR52E8Q6IFG1 317 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 LCN8Q6JVE9 175 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 SERPINA11Q86U17 422 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 OR2T12Q8NG77 320 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 RHBDD1Q8TEB9 315 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 N4BP2L2Q92802 583 aaPredicted RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 CCDC74BQ96LY2 380 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 SLC35A5Q9BS91 424 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 NEUROD4Q9HD90 331 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 FGF21Q9NSA1 209 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 NKX1-2Q9UD57 310 aaPredicted RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 ACSL6Q9UKU0 697 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 KIF26BQ2KJY2 2108 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 WDFY3Q8IZQ1 3526 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 EVPLLA8MZ36 301 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 FAM220BPB1ANY3 271 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 GP1BAP07359 652 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 C8orf89P0DMQ9 161 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 FEN1P39748 380 aaKnown RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 HSPB3Q12988 150 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 ADRM1Q16186 407 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 PRAMEF17Q5VTA0 474 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 NIPAL1Q6NVV3 410 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 CYP2R1Q6VVX0 501 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 DHFR2Q86XF0 187 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 ENDOVQ8N8Q3 282 aaKnown RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 TTC29Q8NA56 475 aaPredicted RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 OR5AK3PQ8NH89 298 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 PNPT1Q8TCS8 783 aaKnown RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 ATOH1Q92858 354 aaPredicted RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 GFM1Q96RP9 751 aaKnown RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 TMEM121BQ9BXQ6 578 aaPredicted RBP13.44□□□□□ -0.26
USP39-220ENST00000613444 MUC13Q9H3R2 512 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 RNPEPL1Q9HAU8 725 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 CUTCQ9NTM9 273 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 IRAK4Q9NWZ3 460 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 SNX13Q9Y5W8 968 aa13.44□□□□□ -0.26
USP39-220ENST00000613444 D6RAR5 112 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 CBFA2T3O75081 653 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 KCNK5O95279 499 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 UQCRC2P22695 453 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 TLX1P31314 330 aaPredicted RBP13.43□□□□□ -0.26
USP39-220ENST00000613444 SOX11P35716 441 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 NCBP2P52298 156 aaKnown RBP eCLIP13.43□□□□□ -0.263e-6■■□□□ 12.2
USP39-220ENST00000613444 ITGA1P56199 1179 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 SPEM2Q0P670 501 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 RGNQ15493 299 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 PTOV1Q86YD1 416 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 CCDC116Q8IYX3 515 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 TRIML2Q8N7C3 387 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 REXO5Q96IC2 774 aaKnown RBP13.43□□□□□ -0.26
USP39-220ENST00000613444 BBS4Q96RK4 519 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 SYNDIG1Q9H7V2 258 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 DCLRE1BQ9H816 532 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 SIDT1Q9NXL6 827 aaKnown RBP13.43□□□□□ -0.26
USP39-220ENST00000613444 PSME2Q9UL46 239 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 PCNX2A6NKB5 2137 aa13.43□□□□□ -0.26
USP39-220ENST00000613444 TCRBV3S1A0A5B6 114 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 ELOVL7A1L3X0 281 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 H0YIG0 161 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 H3BNX3 289 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 ZNF749O43361 778 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 NTRK1P04629 796 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 C8BP07358 591 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 NCK1P16333 377 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 GGT1P19440 569 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 CSNK2A2P19784 350 aaPredicted RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 PPIBP23284 216 aaKnown RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 NTSP30990 170 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 PTGER1P34995 402 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SOX18P35713 384 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 MAT1AQ00266 395 aaKnown RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 C16orf72Q14CZ0 275 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 FAM214AQ32MH5 1076 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 COX20Q5RI15 118 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP39-220ENST00000613444 SAXO2Q658L1 398 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SLC26A7Q8TE54 656 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 PYDC1Q8WXC3 89 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 FAM120BQ96EK7 910 aaKnown RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 DPH2Q9BQC3 489 aaPredicted RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 EDEM2Q9BV94 578 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 CLK4Q9HAZ1 481 aaKnown RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 S100A14Q9HCY8 104 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms