RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ARHGEF15O94989 841 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 AHSGP02765 367 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 OR4C11Q6IEV9 310 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 CPXM2Q8N436 756 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 RNF11Q9Y3C5 154 aa19.62■□□□□ 0.73
UPF1-207ENST00000599848 PRAMEF33A0A0G2JMD5 474 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 SEC14L5O43304 696 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 PRAMEF10O60809 474 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 GPR32O75388 356 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 TMEM63AO94886 807 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 ID2Q02363 134 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 EDAQ92838 391 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 SCAMP4Q969E2 229 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 CCNL2Q96S94 520 aaPredicted RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 ZNF175Q9Y473 711 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 WNT7AO00755 349 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 SIX3O95343 332 aaPredicted RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 HEXAP06865 529 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 CD38P28907 300 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 STK19P49842 368 aaPredicted RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 PTCRAQ6ISU1 281 aaPredicted RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 ANKRD26P1Q6NSI1 321 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 ARHGAP22Q7Z5H3 698 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 OR2L2Q8NH16 312 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 DENND2DQ9H6A0 471 aaPredicted RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 REXO2Q9Y3B8 237 aaKnown RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 UNC119BA6NIH7 251 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 VILLO15195 856 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 IL3P08700 152 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 ZFP69Q49AA0 526 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 RTP2Q5QGT7 225 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 OPN5Q6U736 354 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 ANKK1Q8NFD2 765 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 SPTSSAQ969W0 71 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 FER1L6-AS2Q96M78 137 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 TMEM214Q6NUQ4 689 aaKnown RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 BEND4Q6ZU67 534 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 RNF130Q86XS8 419 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 CCDC116Q8IYX3 515 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 TOMM5Q8N4H5 51 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 APOOQ9BUR5 198 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 SIT1Q9Y3P8 196 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 SLC22A1O15245 554 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 IL1R2P27930 398 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 AFF1P51825 1210 aaKnown RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 SLC25A11Q02978 314 aaKnown RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 SCAPQ12770 1279 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 NCEH1Q6PIU2 408 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 AQP11Q8NBQ7 271 aa19.61■□□□□ 0.73
UPF1-207ENST00000599848 NXT1Q9UKK6 140 aaKnown RBP19.61■□□□□ 0.73
UPF1-207ENST00000599848 UBR1Q8IWV7 1749 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 ZNF806P0C7X5 589 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 ZNF43P17038 809 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 SPINT3P49223 89 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 TBPL1P62380 186 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 MXD1Q05195 221 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 CHRFAM7AQ494W8 412 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 TRMT10AQ8TBZ6 339 aaKnown RBP19.6■□□□□ 0.73
UPF1-207ENST00000599848 LRTOMTQ8WZ04 291 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 ISG20Q96AZ6 181 aaKnown RBP19.6■□□□□ 0.73
UPF1-207ENST00000599848 ABRACLQ9P1F3 81 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 SIX4Q9UIU6 781 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 KCNS2Q9ULS6 477 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 PTRH2Q9Y3E5 179 aaKnown RBP19.6■□□□□ 0.73
UPF1-207ENST00000599848 A6NIZ1 184 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 RAP1BP61224 184 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 RAP1AP62834 184 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 SLC5A9Q2M3M2 681 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 SPERTQ8NA61 448 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 TMIEQ8NEW7 156 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 KLHL13Q9P2N7 655 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 RABL2AQ9UBK7 228 aaPredicted RBP19.6■□□□□ 0.73
UPF1-207ENST00000599848 RABL2BQ9UNT1 228 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 MPPED1O15442 326 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 IFNGR1P15260 489 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 CD40LGP29965 261 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 RIDAP52758 137 aaKnown RBP19.6■□□□□ 0.73
UPF1-207ENST00000599848 PCBP2Q15366 365 aaKnown RBP eCLIP19.6■□□□□ 0.738e-12■■■■■ 95.4
UPF1-207ENST00000599848 DCAF12Q5T6F0 453 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 OR2T33Q8NG76 320 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 RBCK1Q9BYM8 510 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 WRAP73Q9P2S5 460 aaPredicted RBP19.6■□□□□ 0.73
UPF1-207ENST00000599848 M0QZQ0 153 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 STATHP02808 62 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 HTR3AP46098 478 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 ACTA2P62736 377 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 ACTG2P63267 376 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 CYBRD1Q53TN4 286 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 CDKL4Q5MAI5 379 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 C1orf189Q5VU69 101 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 PPP1R3BQ86XI6 285 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 KCND3Q9UK17 655 aa19.6■□□□□ 0.73
UPF1-207ENST00000599848 C9JVG2 144 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 ZNF12P17014 697 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 ATF6P18850 670 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 ADGRE1Q14246 886 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 LPAL2Q16609 132 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 ATG9BQ674R7 924 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 LRP10Q7Z4F1 713 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 HSH2DQ96JZ2 352 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms