RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 BBS4Q96RK4 519 aa13.81□□□□□ -0.2
VRK3-212ENST00000596814 SLC39A3Q9BRY0 314 aa13.81□□□□□ -0.2
VRK3-212ENST00000596814 YIPF2Q9BWQ6 316 aa13.81□□□□□ -0.2
VRK3-212ENST00000596814 SLAMF7Q9NQ25 335 aa13.81□□□□□ -0.2
VRK3-212ENST00000596814 SLAMF8Q9P0V8 285 aa13.81□□□□□ -0.2
VRK3-212ENST00000596814 ZNF780BQ9Y6R6 833 aa13.81□□□□□ -0.2
VRK3-212ENST00000596814 NUP210LQ5VU65 1888 aa13.81□□□□□ -0.2
VRK3-212ENST00000596814 SEC16AO15027 2179 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 SLC30A4O14863 429 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 ANP32DO95626 131 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 C6orf47O95873 294 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 NTRK1P04629 796 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 JMJD7P0C870 316 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 FRKP42685 505 aaPredicted RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 CDKN2CP42773 168 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 TRPC1P48995 793 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 NOVA1P51513 510 aaKnown RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 MAPK10P53779 464 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 PSME3P61289 254 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 CAPRIN1Q14444 709 aaKnown RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 LRIF1Q5T3J3 769 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 DLEU7Q6UYE1 221 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 ZNF595Q8IYB9 648 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 SLC38A9Q8NBW4 561 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 OR4K14Q8NGD5 310 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 ZFP28Q8NHY6 868 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 TANKQ92844 425 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 PMEPA1Q969W9 287 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 CNRIP1Q96F85 164 aaPredicted RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 CGREF1Q99674 301 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 HOPXQ9BPY8 73 aaPredicted RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 PAIP1Q9H074 479 aaKnown RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 ACSS1Q9NUB1 689 aaPredicted RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 TRPC4Q9UBN4 977 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 PISDQ9UG56 409 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 CDV3Q9UKY7 258 aaKnown RBP13.8□□□□□ -0.2
VRK3-212ENST00000596814 PCDHGB4Q9UN71 923 aa13.8□□□□□ -0.2
VRK3-212ENST00000596814 NUP214P35658 2090 aaPredicted RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 DNAJC8O75937 253 aaPredicted RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 FHP07954 510 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 C8orf89P0DMQ9 161 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 PPP2R1BP30154 601 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 ETV5P41161 510 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 MANFP55145 182 aaKnown RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 HBA1P69905 142 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 FOLH1Q04609 750 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 CEBPEQ15744 281 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 DCAF12Q5T6F0 453 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 C8orf82Q6P1X6 216 aaPredicted RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 SAMD14Q8IZD0 417 aaPredicted RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 OR5P2Q8WZ92 322 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 MCUR1Q96AQ8 359 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 OR1F2PQ96R84 312 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 GPATCH1Q9BRR8 931 aaKnown RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 CADM1Q9BY67 442 aaKnown RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 NEUROD4Q9HD90 331 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 VAPAQ9P0L0 249 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.79□□□□□ -0.2
VRK3-212ENST00000596814 PCDHGA7Q9Y5G6 932 aa13.79□□□□□ -0.2
VRK3-212ENST00000596814 C15orf38-AP3S2A0A0A6YYH1 394 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 MYO1GB0I1T2 1018 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ANKRD65E5RJM6 399 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 CLDN4O14493 209 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 PLD2O14939 933 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 NVLO15381 856 aaKnown RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 GSC2O15499 205 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 FGF17O60258 216 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 B4GALT2O60909 372 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 LDB3O75112 727 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 CDC123O75794 336 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 GSNP06396 782 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ABCB1P08183 1280 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 HOXB9P17482 250 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 CSNK2A2P19784 350 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 IL10P22301 178 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 RORAP35398 523 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 FEN1P39748 380 aaKnown RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 NCBP2P52298 156 aaKnown RBP eCLIP13.78□□□□□ -0.2
VRK3-212ENST00000596814 DCDP81605 110 aaKnown RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 ABHD18Q0P651 414 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 HSPB3Q12988 150 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 MLC1Q15049 377 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZNF750Q32MQ0 723 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 GTDC1Q4AE62 458 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 NKAIN1Q4KMZ8 207 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZNF385CQ66K41 422 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 BNC2Q6ZN30 1099 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 ARPINQ7Z6K5 226 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 GOT1L1Q8NHS2 421 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZNF681Q96N22 645 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 AMDHD1Q96NU7 426 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZPBPQ9BS86 351 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ULBP3Q9BZM4 244 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 GLIPR2Q9H4G4 154 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 SPAG4Q9NPE6 437 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 MKKSQ9NPJ1 570 aaPredicted RBP13.78□□□□□ -0.2
VRK3-212ENST00000596814 PRTFDC1Q9NRG1 225 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 SLC6A13Q9NSD5 602 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 TAS2R9Q9NYW1 312 aa13.78□□□□□ -0.2
VRK3-212ENST00000596814 ZNF282Q9UDV7 671 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms