RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 ACSM2AQ08AH3 577 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 GALNT1Q10472 559 aaPredicted RBP10.37□□□□□ -0.75
LIG1-211ENST00000596457 TBL3Q12788 808 aaKnown RBP10.37□□□□□ -0.75
LIG1-211ENST00000596457 KLRB1Q12918 225 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 MPP2Q14168 576 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 SH2D4BQ5SQS7 431 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 ACSM2BQ68CK6 577 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 PLAG1Q6DJT9 500 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 ISLR2Q6UXK2 745 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 HDXQ7Z353 690 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 DDIASQ8IXT1 998 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 KIF2BQ8N4N8 673 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 GBP7Q8N8V2 638 aaPredicted RBP10.37□□□□□ -0.75
LIG1-211ENST00000596457 THAP3Q8WTV1 239 aaPredicted RBP10.37□□□□□ -0.75
LIG1-211ENST00000596457 CHTF18Q8WVB6 975 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 TANKQ92844 425 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 ANKRD9Q96BM1 317 aaPredicted RBP10.37□□□□□ -0.75
LIG1-211ENST00000596457 PPWD1Q96BP3 646 aaKnown RBP10.37□□□□□ -0.75
LIG1-211ENST00000596457 DGAT2Q96PD7 388 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 EPS8L2Q9H6S3 715 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 TEX10Q9NXF1 929 aaPredicted RBP10.37□□□□□ -0.75
LIG1-211ENST00000596457 STMN3Q9NZ72 180 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 C5AR2Q9P296 337 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 MAP10Q9P2G4 905 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 ADAM29Q9UKF5 820 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 PCDHGB7Q9Y5F8 929 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 PTGDR2Q9Y5Y4 395 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 CLCA3PQ9Y6N3 262 aa10.37□□□□□ -0.75
LIG1-211ENST00000596457 A0A1W2PQ72 361 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 TMEM120BA0PK00 339 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 BLACEA4D250 179 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 SLC28A1O00337 649 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 ITM2AO43736 263 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 PCDH7O60245 1069 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 OR10H2O60403 315 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 GUCY1B2O75343 617 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 SEC22BO75396 215 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 BGNP21810 368 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 PIK3R1P27986 724 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 CD97P48960 835 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 TAS2R50P59544 299 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 SERTAD2Q14140 314 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 SPIN4Q56A73 249 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 CRB2Q5IJ48 1285 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 NDUFAF5Q5TEU4 345 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 ABHD17BQ5VST6 288 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 JMJD6Q6NYC1 403 aaPredicted RBP10.36□□□□□ -0.75
LIG1-211ENST00000596457 CLYBLQ8N0X4 340 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 MMP21Q8N119 569 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 TMEM132CQ8N3T6 1108 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 RBMXL3Q8N7X1 1067 aaKnown RBP10.36□□□□□ -0.75
LIG1-211ENST00000596457 GOLGA6L1Q8N7Z2 621 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 DNAJB14Q8TBM8 379 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 PSMF1Q92530 271 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 TM9SF4Q92544 642 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 NCLNQ969V3 563 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 ARL8AQ96BM9 186 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 TM4SF18Q96CE8 201 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 RBM18Q96H35 190 aaKnown RBP10.36□□□□□ -0.75
LIG1-211ENST00000596457 TRMOQ9BU70 441 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 DEFB126Q9BYW3 111 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 OR8D2Q9GZM6 311 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 CDCP1Q9H5V8 836 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 ZNF395Q9H8N7 513 aaPredicted RBP10.36□□□□□ -0.75
LIG1-211ENST00000596457 MMP25Q9NPA2 562 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 ADAP2Q9NPF8 381 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 PFDN4Q9NQP4 134 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 NKIRAS1Q9NYS0 192 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 TRAF6Q9Y4K3 522 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 POLR3HQ9Y535 204 aaPredicted RBP10.36□□□□□ -0.75
LIG1-211ENST00000596457 CLDN16Q9Y5I7 305 aa10.36□□□□□ -0.75
LIG1-211ENST00000596457 ATMQ13315 3056 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 UBR5O95071 2799 aaPredicted RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 TRBV11-1A0A0K0K1C0 115 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 SERTM1A2A2V5 107 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 C17orf105B2RV13 164 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 BIRC5O15392 142 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 RGS14O43566 566 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 SKAP2O75563 359 aaPredicted RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 ERAL1O75616 437 aaKnown RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 GPR75O95800 540 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 ANXA4P09525 319 aaPredicted RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 COX7A2P14406 83 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 ALOX15P16050 662 aaPredicted RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 H2AFXP16104 143 aaPredicted RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 TIA1P31483 386 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIG1-211ENST00000596457 ARRB2P32121 409 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 CASRP41180 1078 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 CLCN2P51788 898 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 ABCE1P61221 599 aaKnown RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 RAE1P78406 368 aaKnown RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 ARG2P78540 354 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 STX3Q13277 289 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 MFAP5Q13361 173 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 NR6A1Q15406 480 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 ELAVL1Q15717 326 aaKnown RBP10.35□□□□□ -0.75
LIG1-211ENST00000596457 ZNF750Q32MQ0 723 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 GALNTL6Q49A17 601 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 AGBL2Q5U5Z8 902 aa10.35□□□□□ -0.75
LIG1-211ENST00000596457 CES4AQ5XG92 561 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms