RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CD3EAPO15446 510 aaKnown RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 TBX1O43435 398 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 B4GAT1O43505 415 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 RGS10O43665 173 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 TLR5O60602 858 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 RNGTTO60942 597 aaKnown RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 CCNKO75909 580 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 STK17BO94768 372 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PRKD3O94806 890 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 INMTO95050 263 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 IFNA2P01563 188 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 AHSGP02765 367 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 YES1P07947 543 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ABCB1P08183 1280 aaPredicted RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 RPS17P08708 135 aaKnown RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 ERCC2P18074 760 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 MSH3P20585 1137 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 EFNA1P20827 205 aaPredicted RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 SAT1P21673 171 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 C5AR1P21730 350 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 HNRNPA2B1P22626 353 aaKnown RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 NR4A1P22736 598 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 DNASE1P24855 282 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ARNTP27540 789 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 RRM2P31350 389 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 S100A5P33763 92 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PIGAP37287 484 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 NR4A2P43354 598 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 GNPDA1P46926 289 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 MASP1P48740 699 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SUOXP51687 545 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ISL1P61371 349 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ST8SIA6P61647 398 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 CSNK2BP67870 215 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 MRPS15P82914 257 aaKnown RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 CLCQ05315 142 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.96□□□□□ -1.78
LIG3-211ENST00000588713 LCP2Q13094 533 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 CSHL1Q14406 222 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 GALNT3Q14435 633 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 POU6F1Q14863 301 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 DUSP7Q16829 419 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 IMPG1Q17R60 797 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 UNC50Q53HI1 259 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SMUG1Q53HV7 270 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 NKAPLQ5M9Q1 402 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 BRMS1LQ5PSV4 323 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 CATSPEREQ5SY80 951 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 TPRG1LQ5T0D9 272 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.96□□□□□ -1.78
LIG3-211ENST00000588713 OTUD3Q5T2D3 398 aaPredicted RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 TMEM236Q5W0B7 351 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 CLEC6AQ6EIG7 209 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SULT1C3Q6IMI6 304 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 LAIR2Q6ISS4 152 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PODNL1Q6PEZ8 512 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 TBPL2Q6SJ96 375 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 RPTNQ6XPR3 784 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 STK32CQ86UX6 486 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PIGZQ86VD9 579 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 OSTM1Q86WC4 334 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 FAM131BQ86XD5 332 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 HIPK1Q86Z02 1210 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 HID1Q8IV36 788 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 CCDC28AQ8IWP9 274 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 STK40Q8N2I9 435 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 CLIP4Q8N3C7 705 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 FAM109AQ8N4B1 249 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 DTWD1Q8N5C7 304 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PAF1Q8N7H5 531 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SPERTQ8NA61 448 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 FDCSPQ8NFU4 85 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 OR6F1Q8NGZ6 308 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 RHEBL1Q8TAI7 183 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 HCAR2Q8TDS4 363 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 HTRA1Q92743 480 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PEX13Q92968 403 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SLC38A4Q969I6 547 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 NACC2Q96BF6 587 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ZHX1-C8orf76Q96EF9 292 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SLC47A1Q96FL8 570 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PGAP3Q96FM1 320 aaPredicted RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 ZNF560Q96MR9 790 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 RNF145Q96MT1 663 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 FCRL5Q96RD9 977 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 PKMYT1Q99640 499 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 LRRC61Q9BV99 259 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 NUDT9Q9BW91 350 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 C1QTNF3Q9BXJ4 246 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ITPAQ9BY32 194 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 KRTAP9-2Q9BYQ4 174 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 AMBRA1Q9C0C7 1298 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 SPRTNQ9H040 489 aaPredicted RBP3.96□□□□□ -1.78
LIG3-211ENST00000588713 DCSTAMPQ9H295 470 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 DUSP21Q9H596 190 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 GORASP2Q9H8Y8 452 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 IL1RL2Q9HB29 575 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 TNFRSF12AQ9NP84 129 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ACOT13Q9NPJ3 140 aa3.96□□□□□ -1.78
LIG3-211ENST00000588713 ABCB10Q9NRK6 738 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms