RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 H0YIG0 161 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 TMX2-CTNND1H3BSU7 103 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 CXCR6O00574 342 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 P2RX6O15547 441 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 OR10H2O60403 315 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 GALR3O60755 368 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 COQ9O75208 318 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 RDH16O75452 317 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 PDE9AO76083 593 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 AGR2O95994 175 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 NTRK1P04629 796 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 GP1BAP07359 652 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 RETP07949 1114 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 FHP07954 510 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 MSL3P1P0C860 447 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 CKMT1AP12532 417 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 CKMT2P17540 419 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 NELFEP18615 380 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 FBLP22087 321 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 CSTF2P33240 577 aaKnown RBP eCLIP5.85□□□□□ -1.47
LIG3-206ENST00000586058 MAGEA8P43361 318 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 LIM2P55344 173 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 HBA1P69905 142 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 MC1RQ01726 317 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 BNC1Q01954 994 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 CHRNB3Q05901 458 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 RBBP4Q09028 425 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 HYAL2Q12891 473 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 FOXC1Q12948 553 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 SLC13A2Q13183 592 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 BIKQ13323 160 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 SLC14A1Q13336 389 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 TRA2AQ13595 282 aaKnown RBP eCLIP5.85□□□□□ -1.47
LIG3-206ENST00000586058 SHBQ15464 509 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 ZNHIT3Q15649 155 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 ZNF630Q2M218 657 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 LRRC23Q53EV4 343 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 TBCELQ5QJ74 424 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 GCNT6Q5T4J0 391 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 ATAD3BQ5T9A4 648 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 GLYATQ6IB77 296 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 MRM1Q6IN84 353 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 LCN8Q6JVE9 175 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 FBXO42Q6P3S6 717 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 DLEU7Q6UYE1 221 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 CYP2R1Q6VVX0 501 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 TMEM64Q6YI46 380 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 ZNF793Q6ZN11 406 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 PTRH1Q86Y79 214 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 TMEM126BQ8IUX1 230 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 OR4N4Q8N0Y3 316 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 EID3Q8N140 333 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 DNAJC22Q8N4W6 341 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 C11orf65Q8NCR3 313 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 FAM156AQ8NDB6 213 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 OR52N2Q8NGI0 321 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 OR5AK3PQ8NH89 298 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 GOT1L1Q8NHS2 421 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 PNPT1Q8TCS8 783 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 RHBDD1Q8TEB9 315 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 WDR60Q8WVS4 1066 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 RASSF5Q8WWW0 418 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 LZICQ8WZA0 190 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 TANKQ92844 425 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 CIDECQ96AQ7 238 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 MS4A4EQ96PG1 132 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 MAPKAP1Q9BPZ7 522 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 MACROD1Q9BQ69 325 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 INPP5KQ9BT40 448 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 EDEM2Q9BV94 578 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 YIPF2Q9BWQ6 316 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 ZNF717Q9BY31 904 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 STRADBQ9C0K7 418 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 PIF1Q9H611 641 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 TMEM9BQ9NQ34 198 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 SLC52A3Q9NQ40 469 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 FSCN3Q9NQT6 498 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 CUTCQ9NTM9 273 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 ZCCHC3Q9NUD5 404 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 DDX18Q9NVP1 670 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 CMTM6Q9NX76 183 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 TAS2R7Q9NYW3 318 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 C6orf203Q9P0P8 240 aaPredicted RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 STX18Q9P2W9 335 aaKnown RBP5.85□□□□□ -1.47
LIG3-206ENST00000586058 P2RX2Q9UBL9 471 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 ANAPC2Q9UJX6 822 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 RARRES3Q9UL19 164 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 AURKCQ9UQB9 309 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 PCDHGB3Q9Y5G1 929 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 R4GN57 208 aa5.85□□□□□ -1.47
LIG3-206ENST00000586058 A0A0A6YYC8 382 aaPredicted RBP5.84□□□□□ -1.47
LIG3-206ENST00000586058 IGHV5-51A0A0C4DH38 117 aa5.84□□□□□ -1.47
LIG3-206ENST00000586058 A0A1B0GX78 115 aa5.84□□□□□ -1.47
LIG3-206ENST00000586058 GLOD5A6NK44 160 aa5.84□□□□□ -1.47
LIG3-206ENST00000586058 DUXAA6NLW8 204 aa5.84□□□□□ -1.47
LIG3-206ENST00000586058 I3L1I5 382 aaPredicted RBP5.84□□□□□ -1.47
LIG3-206ENST00000586058 GNGT2O14610 69 aa5.84□□□□□ -1.47
LIG3-206ENST00000586058 DSCR3O14972 297 aa5.84□□□□□ -1.47
LIG3-206ENST00000586058 HNRNPRO43390 633 aaKnown RBP5.84□□□□□ -1.47
LIG3-206ENST00000586058 EMC8O43402 210 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms