RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TNFAIP8L2Q6P589 184 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 DCDC5Q6ZRR9 648 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 IGFN1Q86VF2 1251 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 UTP15Q8TED0 518 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 CHPT1Q8WUD6 406 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 PROX1Q92786 737 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 SLC38A4Q969I6 547 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 EXOSC8Q96B26 276 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 LGALS12Q96DT0 336 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 TMEM19Q96HH6 336 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 COX4I2Q96KJ9 171 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 ALPK1Q96QP1 1244 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 FERD3LQ96RJ6 166 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 INSM2Q96T92 566 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 RSPO3Q9BXY4 272 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 MTIF3Q9H2K0 278 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 DDX31Q9H8H2 851 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 AMBNQ9NP70 447 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 AKIP1Q9NQ31 210 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 TEX10Q9NXF1 929 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 ENOPH1Q9UHY7 261 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 C2orf16Q68DN1 1984 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 KIF26AQ9ULI4 1882 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 HMGN4O00479 90 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 FFAR1O14842 300 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 CBFA2T3O75081 653 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 SULT1C4O75897 302 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 NADKO95544 446 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 ACP5P13686 325 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 POU2F1P14859 743 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 C5AR1P21730 350 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 GRK3P35626 688 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 LIM2P55344 173 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 PRDX1Q06830 199 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 ENPP2Q13822 863 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 FGL2Q14314 439 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 MLC1Q15049 377 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 IRF4Q15306 451 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 MAPK11Q15759 364 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 C2orf27AQ580R0 203 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 ZNF770Q6IQ21 691 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 HDDC3Q8N4P3 179 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 RAB42Q8N4Z0 105 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 AQP11Q8NBQ7 271 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 GPR32P1Q8NGA4 272 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 PSMA8Q8TAA3 256 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 CREB3L4Q8TEY5 395 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 RPL3LQ92901 407 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 GTPBP3Q969Y2 492 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 ZBED6CLQ96FA7 236 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 C12orf66Q96MD2 445 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 MAPKAP1Q9BPZ7 522 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 ALOXE3Q9BYJ1 711 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 HMG20AQ9NP66 347 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 ACSS1Q9NUB1 689 aaPredicted RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 TAS2R7Q9NYW3 318 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 SELENONQ9NZV5 590 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 RHCGQ9UBD6 479 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 ZFR2Q9UPR6 939 aaKnown RBP9.57□□□□□ -0.88
VPS53-220ENST00000576149 PMF1-BGLAPU3KQ54 211 aa9.57□□□□□ -0.88
VPS53-220ENST00000576149 IGKV1-8A0A0C4DH67 115 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 M0R082 166 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 TOR1BO14657 336 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 CLEC3AO75596 197 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 PAK4O96013 591 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 ADH1BP00325 375 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 GASTP01350 101 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 VAMP1P23763 118 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 LIPAP38571 399 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 EIF2DP41214 584 aaKnown RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 SERPINB10P48595 397 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 TRA2BP62995 288 aaKnown RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 PTGES3Q15185 160 aaKnown RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 SPDYE7PQ495Y7 208 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 COLEC12Q5KU26 742 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 FAM109BQ6ICB4 259 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 OR4C11Q6IEV9 310 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 KLHL17Q6TDP4 642 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 PLD3Q8IV08 490 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 SLC44A2Q8IWA5 706 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 CENPSQ8N2Z9 138 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 TMCO5AQ8N6Q1 288 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 AMER3Q8N944 861 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 TP53I13Q8NBR0 393 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 OR2A1Q8NGT9 310 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 S100ZQ8WXG8 99 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 RAB8BQ92930 207 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 UCN3Q969E3 161 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 CAMK1GQ96NX5 476 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 BTBD2Q9BX70 525 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 PLA2G2FQ9BZM2 168 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 WDR12Q9GZL7 423 aaKnown RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 NMNAT1Q9HAN9 279 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 FBXO8Q9NRD0 319 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 IMPAD1Q9NX62 359 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 PNMA8BQ9ULN7 279 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS53-220ENST00000576149 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 SNX11Q9Y5W9 270 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 PLXND1Q9Y4D7 1925 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms