RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TNNI3P19429 210 aa14□□□□□ -0.17
VPS39-210ENST00000568357 COL8A1P27658 744 aa14□□□□□ -0.17
VPS39-210ENST00000568357 TLX1P31314 330 aaPredicted RBP14□□□□□ -0.17
VPS39-210ENST00000568357 SLC18A2Q05940 514 aa14□□□□□ -0.17
VPS39-210ENST00000568357 SERTAD2Q14140 314 aa14□□□□□ -0.17
VPS39-210ENST00000568357 ERCC6LQ2NKX8 1250 aa14□□□□□ -0.17
VPS39-210ENST00000568357 ZNF766Q5HY98 468 aa14□□□□□ -0.17
VPS39-210ENST00000568357 ZNF324BQ6AW86 544 aaPredicted RBP14□□□□□ -0.17
VPS39-210ENST00000568357 FAM180AQ6UWF9 173 aa14□□□□□ -0.17
VPS39-210ENST00000568357 ZYG11AQ6WRX3 759 aa14□□□□□ -0.17
VPS39-210ENST00000568357 C16orf47Q6ZP98 133 aaPredicted RBP14□□□□□ -0.17
VPS39-210ENST00000568357 DGAT2L6Q6ZPD8 337 aa14□□□□□ -0.17
VPS39-210ENST00000568357 ZNF227Q86WZ6 799 aa14□□□□□ -0.17
VPS39-210ENST00000568357 NUDT13Q86X67 352 aa14□□□□□ -0.17
VPS39-210ENST00000568357 C4orf33Q8N1A6 199 aa14□□□□□ -0.17
VPS39-210ENST00000568357 METTL4Q8N3J2 472 aa14□□□□□ -0.17
VPS39-210ENST00000568357 CDYL2Q8N8U2 506 aa14□□□□□ -0.17
VPS39-210ENST00000568357 SUN3Q8TAQ9 357 aa14□□□□□ -0.17
VPS39-210ENST00000568357 SSC4DQ8WTU2 575 aa14□□□□□ -0.17
VPS39-210ENST00000568357 SELENOMQ8WWX9 145 aa14□□□□□ -0.17
VPS39-210ENST00000568357 TANKQ92844 425 aa14□□□□□ -0.17
VPS39-210ENST00000568357 PPWD1Q96BP3 646 aaKnown RBP14□□□□□ -0.17
VPS39-210ENST00000568357 VMP1Q96GC9 406 aa14□□□□□ -0.17
VPS39-210ENST00000568357 ZNF382Q96SR6 550 aa14□□□□□ -0.17
VPS39-210ENST00000568357 HBEGFQ99075 208 aa14□□□□□ -0.17
VPS39-210ENST00000568357 LIN28AQ9H9Z2 209 aaKnown RBP14□□□□□ -0.17
VPS39-210ENST00000568357 LYARQ9NX58 379 aaKnown RBP14□□□□□ -0.17
VPS39-210ENST00000568357 GRID1Q9ULK0 1009 aa14□□□□□ -0.17
VPS39-210ENST00000568357 SNX6Q9UNH7 406 aa14□□□□□ -0.17
VPS39-210ENST00000568357 SHANK1Q9Y566 2161 aa14□□□□□ -0.17
VPS39-210ENST00000568357 LRBAP50851 2863 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 ANKUB1A6NFN9 424 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 UBFD1O14562 309 aaKnown RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 WISP2O76076 250 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 AIFM1O95831 613 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 DDAH2O95865 285 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 NUDT17P0C025 328 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 MYL2P10916 166 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 TRHRP34981 398 aaPredicted RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 STT3AP46977 705 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 OC90Q02509 493 aaPredicted RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 FOLH1Q04609 750 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 GALNT1Q10472 559 aaPredicted RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 TBL3Q12788 808 aaKnown RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 FHL5Q5TD97 284 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 EMBQ6PCB8 327 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 GPRIN3Q6ZVF9 776 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 CCNYL1Q8N7R7 359 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 BCORP1Q8N888 145 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 MORN4Q8NDC4 146 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 OR14A16Q8NHC5 309 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 PRR7Q8TB68 274 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 SREK1Q8WXA9 508 aaKnown RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 DAZLQ92904 295 aaKnown RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 SCMH1Q96GD3 660 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 SLX1AQ9BQ83 275 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 PARD6BQ9BYG5 372 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 OR8D2Q9GZM6 311 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 GSTO2Q9H4Y5 243 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 TRIM45Q9H8W5 580 aaPredicted RBP13.99□□□□□ -0.17
VPS39-210ENST00000568357 KLHL1Q9NR64 748 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 AHSPQ9NZD4 102 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 LRFN1Q9P244 771 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 SLC12A4Q9UP95 1085 aa13.99□□□□□ -0.17
VPS39-210ENST00000568357 C2CD3Q4AC94 2353 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 SYNDIG1LA6NDD5 238 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 HRKO00198 91 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 COPEO14579 308 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 PGRMC2O15173 223 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 SEMA7AO75326 666 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 ZFAND5O76080 213 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 RASAL1O95294 804 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 GPR75O95800 540 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 MLYCDO95822 493 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 CHN1P15882 459 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 BUD31P41223 144 aaPredicted RBP13.98□□□□□ -0.17
VPS39-210ENST00000568357 CYB561P49447 251 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 HLCSP50747 726 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 PMP22Q01453 160 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 LCP2Q13094 533 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 INAQ16352 499 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 CCDC153Q494R4 210 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 CCNYL2Q5T2Q4 361 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 ST6GALNAC3Q8NDV1 305 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 METTL6Q8TCB7 284 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 SLC2A12Q8TD20 617 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 DOK4Q8TEW6 326 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 ZNF721Q8TF20 911 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 CAVIN3Q969G5 261 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 RBM18Q96H35 190 aaKnown RBP13.98□□□□□ -0.17
VPS39-210ENST00000568357 KCNA7Q96RP8 456 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 BRF2Q9HAW0 419 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 OLAHQ9NV23 265 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 TEX10Q9NXF1 929 aaPredicted RBP13.98□□□□□ -0.17
VPS39-210ENST00000568357 ADAM29Q9UKF5 820 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 TIMM22Q9Y584 194 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 PCDHGB6Q9Y5F9 930 aa13.98□□□□□ -0.17
VPS39-210ENST00000568357 PRRC2CQ9Y520 2896 aaKnown RBP13.97□□□□□ -0.17
VPS39-210ENST00000568357 A0A1W2PS29 197 aa13.97□□□□□ -0.17
VPS39-210ENST00000568357 ARHGAP10A1A4S6 786 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms