RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 COMMD6Q7Z4G1 85 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 ANKRD37Q7Z713 158 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 DDIASQ8IXT1 998 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 ZNF160Q9HCG1 818 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 TNFRSF12AQ9NP84 129 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 SLAMF7Q9NQ25 335 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 RIC8BQ9NVN3 520 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 LUZP4Q9P127 313 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 TRAF6Q9Y4K3 522 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 OTOGQ6ZRI0 2925 aa16.18■□□□□ 0.18
CLN3-217ENST00000565354 POLEQ07864 2286 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 APCP25054 2843 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 SERTM1A2A2V5 107 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 A6NL46 340 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 RGS14O43566 566 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 LYPLA1O75608 230 aaPredicted RBP16.17■□□□□ 0.18
CLN3-217ENST00000565354 CEACAM4O75871 244 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 SASH3O75995 380 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 MYO1DO94832 1006 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 ITGA3P26006 1051 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 SLC1A6P48664 564 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 MAPK12P53778 367 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 HNRNPH2P55795 449 aaKnown RBP16.17■□□□□ 0.18
CLN3-217ENST00000565354 WDR4P57081 412 aaKnown RBP16.17■□□□□ 0.18
CLN3-217ENST00000565354 TNFRSF17Q02223 184 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 STX4Q12846 297 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 AIMP2Q13155 320 aaKnown RBP16.17■□□□□ 0.18
CLN3-217ENST00000565354 SFT2D3Q587I9 215 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 KANK2Q63ZY3 851 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 CLNKQ7Z7G1 428 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 PARP9Q8IXQ6 854 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 TWIST2Q8WVJ9 160 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 LPAR4Q99677 370 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 ZNF717Q9BY31 904 aaPredicted RBP16.17■□□□□ 0.18
CLN3-217ENST00000565354 KCMF1Q9P0J7 381 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 MAP10Q9P2G4 905 aa16.17■□□□□ 0.18
CLN3-217ENST00000565354 LOC102723996A0A087X1L8 192 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 IGHV1-45A0A0A0MS14 117 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 IGHV3-20A0A0C4DH32 117 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 GNG14A0A1W2PPG7 69 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 SYNDIG1LA6NDD5 238 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 TMEM233B4DJY2 109 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 CYR61O00622 381 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 TMPRSS11DO60235 418 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 PCDH7O60245 1069 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 RSL1D1O76021 490 aaKnown RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 SEC24DO94855 1032 aaPredicted RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 SNUPNO95149 360 aaKnown RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 FGF4P08620 206 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 NR2F6P10588 404 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 COX6A1P12074 109 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 TPP2P29144 1249 aaPredicted RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 PPP2R1BP30154 601 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 HNRNPFP52597 415 aaKnown RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 EFNA3P52797 238 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 TBL3Q12788 808 aaKnown RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 NR6A1Q15406 480 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 ATG16L1Q676U5 607 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 SLC6A19Q695T7 634 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 HPS6Q86YV9 775 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 KIRREL3Q8IZU9 778 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 TMEM52Q8NDY8 209 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 CHTF18Q8WVB6 975 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 DYDC1Q8WWB3 177 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 APIPQ96GX9 242 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 MESP1Q9BRJ9 268 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 TUBB6Q9BUF5 446 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 MFRPQ9BY79 579 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 ILKAPQ9H0C8 392 aaPredicted RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 ZNF700Q9H0M5 742 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 RPF2Q9H7B2 306 aaKnown RBP16.16■□□□□ 0.18
CLN3-217ENST00000565354 PFDN4Q9NQP4 134 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 NECTIN3Q9NQS3 549 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 ATG4BQ9Y4P1 393 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 SCN2AQ99250 2005 aa16.16■□□□□ 0.18
CLN3-217ENST00000565354 A8MUA0 341 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 MASP2O00187 686 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 PROM1O43490 865 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 ITM2AO43736 263 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 KLHL41O60662 606 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 CTNSO60931 367 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 SKAP2O75563 359 aaPredicted RBP16.15■□□□□ 0.18
CLN3-217ENST00000565354 IFNA16P05015 189 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 LINC00032P0C843 101 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 ICAM2P13598 275 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 ELAVL4P26378 380 aaKnown RBP16.15■□□□□ 0.18
CLN3-217ENST00000565354 AP2B1P63010 937 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 PCOLCEQ15113 449 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 HSP90B2PQ58FF3 399 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 C18orf63Q68DL7 685 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 MRM1Q6IN84 353 aaKnown RBP16.15■□□□□ 0.18
CLN3-217ENST00000565354 PAPD4Q6PIY7 484 aaKnown RBP16.15■□□□□ 0.18
CLN3-217ENST00000565354 TRIM46Q7Z4K8 759 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 SCUBE1Q8IWY4 988 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 GALNT16Q8N428 558 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 C7orf57Q8NEG2 295 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 OR6Y1Q8NGX8 325 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 CDC26Q8NHZ8 85 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 TANKQ92844 425 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 PNPLA2Q96AD5 504 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms