RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 HORMAD2Q8N7B1 307 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 ZNF366Q8N895 744 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 OR2A12Q8NGT7 310 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 SLC38A5Q8WUX1 472 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 METTL2AQ96IZ6 378 aaKnown RBP12.57□□□□□ -0.4
CLN3-210ENST00000563874 NPAP1Q9NZP6 1156 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 NEDD8-MDP1E9PL57 170 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 RFXAPO00287 272 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 RTCAO00442 366 aaKnown RBP12.57□□□□□ -0.4
CLN3-210ENST00000563874 ATG13O75143 517 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 LEFTY1O75610 366 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 UGT2B17O75795 530 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 OSMP13725 252 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 ALDH9A1P49189 494 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 XKP51811 444 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 RHAGQ02094 409 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 LARS2Q15031 903 aaKnown RBP12.57□□□□□ -0.4
CLN3-210ENST00000563874 SNAP47Q5SQN1 464 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 FAM71E1Q6IPT2 247 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 OLIG3Q7RTU3 272 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 METTL3Q86U44 580 aaKnown RBP12.57□□□□□ -0.4
CLN3-210ENST00000563874 MEX3DQ86XN8 651 aaKnown RBP12.57□□□□□ -0.4
CLN3-210ENST00000563874 GPR32P1Q8NGA4 272 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 UBASH3BQ8TF42 649 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 MRPS31Q92665 395 aaKnown RBP12.57□□□□□ -0.4
CLN3-210ENST00000563874 FOPNLQ96NB1 174 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 SNX18Q96RF0 628 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 NRTNQ99748 197 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 SLC25A13Q9UJS0 675 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 STUB1Q9UNE7 303 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 CCL26Q9Y258 94 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 CARD8Q9Y2G2 431 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 PCDHGB2Q9Y5G2 931 aa12.57□□□□□ -0.4
CLN3-210ENST00000563874 A8MVJ9 347 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 ZNF670-ZNF695F2Z2N8 137 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 TLX2O43763 284 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 EFEMP2O95967 443 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 POLR2LP62875 67 aaKnown RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 HOXC5Q00444 222 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CD83Q01151 205 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 TMEM115Q12893 351 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 TARDBPQ13148 414 aaKnown RBP eCLIP12.56□□□□□ -0.4
CLN3-210ENST00000563874 ARSIQ5FYB1 569 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 REEP3Q6NUK4 255 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 TCTN3Q6NUS6 607 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 USP30Q70CQ3 517 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 HTR3DQ70Z44 454 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 PHC2Q8IXK0 858 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CFAP206Q8IYR0 622 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CAMKK1Q8N5S9 505 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 ANKK1Q8NFD2 765 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CYB5D2Q8WUJ1 264 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CXorf40BQ96DE9 158 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CPEB1Q9BZB8 566 aaKnown RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 POLR2J3Q9H1A7 115 aaKnown RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 CTPS2Q9NRF8 586 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 TAAR2Q9P1P5 351 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 SEC14L4Q9UDX3 406 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 ENOPH1Q9UHY7 261 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 SSR3Q9UNL2 185 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 MAPRE3Q9UPY8 281 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CMAHPQ9Y471 501 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 A0A1W2PQL4 384 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 SLC5A10A0PJK1 596 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 MYL12BO14950 172 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 TMCC2O75069 709 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 SOD2P04179 222 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CTSAP10619 480 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 ELAVL4P26378 380 aaKnown RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 CAV3P56539 151 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 HYAL2Q12891 473 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 PDE7AQ13946 482 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CDK10Q15131 360 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 DCST1Q5T197 706 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 SZRD1Q7Z422 152 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 SYT14Q8NB59 555 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 OR4D11Q8NGI4 311 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 TMEM19Q96HH6 336 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 DIRAS2Q96HU8 199 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 IL17FQ96PD4 163 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 NLNQ9BYT8 704 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 C11orf54Q9H0W9 315 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 SLAMF7Q9NQ25 335 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 PCDH10Q9P2E7 1040 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 GULP1Q9UBP9 304 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 GRIP1Q9Y3R0 1128 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 DNMT3AQ9Y6K1 912 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 DSPPQ9NZW4 1301 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 HEPACAM2A8MVW5 462 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 LEFTY2O00292 366 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 C1orf105O95561 183 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 WEE1P30291 646 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 ARPC4P59998 168 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 HSPB3Q12988 150 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 PIN1Q13526 163 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 ZNF284Q2VY69 593 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 HENMT1Q5T8I9 393 aaKnown RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 LSRQ86X29 649 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 LSM14AQ8ND56 463 aaKnown RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 SETD6Q8TBK2 473 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms