RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 TMEM191BP0C7N4 346 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 UMPSP11172 480 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CEACAM1P13688 526 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 F3P13726 295 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF44P15621 663 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 BMP7P18075 431 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PTNP21246 168 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 FBLP22087 321 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 UBA1P22314 1058 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ARRB2P32121 409 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 FDFT1P37268 417 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 HAAOP46952 286 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 COPB1P53618 953 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SOX10P56693 466 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SSTP61278 116 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CCZ1BP86790 482 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CCZ1P86791 482 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF177Q13360 481 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 MSLNQ13421 630 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 DRP2Q13474 957 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ENPP2Q13822 863 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 MFSD13AQ14CX5 517 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 STK38Q15208 465 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CAMK4Q16566 473 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PTGISQ16647 500 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PDCD4Q53EL6 469 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZC2HC1CQ53FD0 456 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CELF3Q5SZQ8 465 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SEL1L3Q68CR1 1132 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SIGIRRQ6IA17 410 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CAPRIN2Q6IMN6 1127 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TTC23LQ6PF05 361 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CROCCP3Q8IVE0 287 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NKAIN4Q8IVV8 208 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CCDC60Q8IWA6 550 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SIDT2Q8NBJ9 832 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SPATA4Q8NEY3 305 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ENGASEQ8NFI3 743 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ACMSDQ8TDX5 336 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 EMG1Q92979 244 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ABHD8Q96I13 439 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 TAAR1Q96RJ0 339 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 KLC2Q9H0B6 622 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 NSRP1Q9H0G5 558 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 FBXO44Q9H4M3 255 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF768Q9H5H4 540 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 C11orf49Q9H6J7 331 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 COG4Q9H9E3 785 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 MRPL47Q9HD33 250 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PHPT1Q9NRX4 125 aaPredicted RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 CISD1Q9NZ45 108 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 GCNT4Q9P109 453 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 PEF1Q9UBV8 284 aaKnown RBP4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 SEC14L3Q9UDX4 400 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 GAB2Q9UQC2 676 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 KLK4Q9Y5K2 254 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 ATAD5Q96QE3 1844 aa4.87□□□□□ -1.63
VPS35P1-201ENST00000563400 DDX60LQ5H9U9 1706 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CDK5RAP2Q96SN8 1893 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 LAMA4Q16363 1823 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 EMSYQ7Z589 1322 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ARID1BQ8NFD5 2236 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 A0A087WUV0 522 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 EIF4E1BA6NMX2 242 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 C12orf71A8MTZ7 269 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 VWC2LB2RUY7 222 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TEX46H3BTG2 121 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CLIC1O00299 241 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ARPC3O15145 178 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 YY2O15391 372 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TLX3O43711 291 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 NME2P1O60361 137 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ACSL4O60488 711 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TMCC1O94876 653 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CPNE6O95741 557 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 MOCS2O96007 188 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ITGB3P05106 788 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 GLAP06280 429 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 SP9P0CG40 484 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 SMIM18P0DKX4 95 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 SAGP10523 405 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CYBAP13498 195 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 UGT1A1P22309 533 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 APOBEC3AP31941 199 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TNFRSF4P43489 277 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 QARSP47897 775 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CSNK1EP49674 416 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 BCAP31P51572 246 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 PSMC5P62195 406 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 RPP38P78345 283 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 MYBPC1Q00872 1141 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CFHR3Q02985 330 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CACNG1Q06432 222 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CUL3Q13618 768 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TFDP1Q14186 410 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 RBBP5Q15291 538 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 P2RY14Q15391 338 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 KIF19Q2TAC6 998 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 AGKQ53H12 422 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 KIAA1755Q5JYT7 1200 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms