RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 VPS33AQ96AX1 596 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 BIRC7Q96CA5 298 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 RHBDF1Q96CC6 855 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 FBXL8Q96CD0 374 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 R3HDM4Q96D70 268 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 YIPF6Q96EC8 236 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 VMP1Q96GC9 406 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 PDLIM5Q96HC4 596 aaKnown RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 ZNF479Q96JC4 524 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 FCRL1Q96LA6 429 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 C8orf48Q96LL4 319 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 PPP3R2Q96LZ3 170 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 TBATAQ96M53 351 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 CEP295NLQ96MC4 621 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 GLT1D1Q96MS3 346 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 DACH2Q96NX9 599 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 MUS81Q96NY9 551 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 KLHL5Q96PQ7 755 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 ZNF300Q96RE9 604 aaPredicted RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 ZNF347Q96SE7 839 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 PARK7Q99497 189 aaKnown RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 CGREF1Q99674 301 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 GPR21Q99679 349 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 PITX2Q99697 317 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 SEMA3CQ99985 751 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 RBM4BQ9BQ04 359 aaKnown RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 THAP7Q9BT49 309 aaPredicted RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 DPCDQ9BVM2 203 aaPredicted RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 RBM4Q9BWF3 364 aaKnown RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 FUNDC2Q9BWH2 189 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 CHID1Q9BWS9 393 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 TTLL2Q9BWV7 592 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 LHPPQ9H008 270 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 P2RY12Q9H244 342 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 RAD21L1Q9H4I0 556 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 FBXO44Q9H4M3 255 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 CLMPQ9H6B4 373 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 IL1RL2Q9HB29 575 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 FANCEQ9HB96 536 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 ANKHQ9HCJ1 492 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 HMG20AQ9NP66 347 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 SEMA4BQ9NPR2 832 aaPredicted RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 NECTIN3Q9NQS3 549 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 MTPAPQ9NVV4 582 aaKnown RBP eCLIP2.37□□□□□ -2.03
SPG11-223ENST00000560858 FAM118AQ9NWS6 357 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 PAK1IP1Q9NWT1 392 aaPredicted RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 COMMD8Q9NX08 183 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 MPP6Q9NZW5 540 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 DNAJB9Q9UBS3 223 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 SUN2Q9UH99 717 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 SERTAD3Q9UJW9 196 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 C3orf18Q9UK00 162 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 INTS6Q9UL03 887 aaKnown RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 PAIP2BQ9ULR5 123 aaKnown RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 MAPRE3Q9UPY8 281 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 PDE10AQ9Y233 779 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 MAN2B2Q9Y2E5 1009 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 CRYL1Q9Y2S2 319 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 TDRKHQ9Y2W6 561 aaKnown RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 TMED5Q9Y3A6 229 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 CCL27Q9Y4X3 112 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 POLR3HQ9Y535 204 aaPredicted RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 PCDHGA8Q9Y5G5 932 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 CPQQ9Y646 472 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 ARL5AQ9Y689 179 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 AP1M2Q9Y6Q5 423 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 HSPE1-MOB4S4R3N1 261 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 OBSCNQ5VST9 7968 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 BPTFQ12830 3046 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 SCN5AQ14524 2016 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 MN1Q10571 1320 aaPredicted RBP2.37□□□□□ -2.03
SPG11-223ENST00000560858 COL4A2P08572 1712 aa2.37□□□□□ -2.03
SPG11-223ENST00000560858 A0A096LPI6 279 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 TRBV5-4A0A0C4DH59 114 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 A0A0U1RQF3 1178 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 A0A1B0GVM2 712 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 ELOVL7A1L3X0 281 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 ISPDA4D126 451 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 ZNF99A8MXY4 864 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 TTC34A8MYJ7 566 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 EIF3FO00303 357 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 CDC7O00311 574 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 KPNA4O00629 521 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 GAPDHSO14556 408 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 OR7A17O14581 309 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 BCKDKO14874 412 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 SYN3O14994 580 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 PFDN6O15212 129 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 AQP9O43315 295 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 B4GAT1O43505 415 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 CA12O43570 354 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 TBC1D4O60343 1298 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 DFNA5O60443 496 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 DPM1O60762 260 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NDUFS2O75306 463 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 NIPSNAP2O75323 286 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 BCAS1O75363 584 aaPredicted RBP2.36□□□□□ -2.03
SPG11-223ENST00000560858 CRCPO75575 148 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 CREG1O75629 220 aa2.36□□□□□ -2.03
SPG11-223ENST00000560858 GJB3O75712 270 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms