RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PPIEQ9UNP9 301 aaKnown RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 HEMK1Q9Y5R4 338 aaPredicted RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 FLNCQ14315 2725 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 USP9XQ93008 2570 aaPredicted RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 A0A1W2PR48 441 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 A8MUA0 341 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 FGF17O60258 216 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 NPHS1O60500 1241 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 LDB3O75112 727 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 PRKRAO75569 313 aaKnown RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 CRCPO75575 148 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 MYO1DO94832 1006 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 KLK1P06870 262 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 BPGMP07738 259 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 DHRS4L1P0CG22 281 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 UROSP10746 265 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 TLX1P31314 330 aaPredicted RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 CASRP41180 1078 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 BUD31P41223 144 aaPredicted RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 SERPINB4P48594 390 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 IGLV3-21P80748 117 aaPredicted RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 HMGCS1Q01581 520 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 ID2Q02363 134 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 DMTNQ08495 405 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 STX4Q12846 297 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 SERTAD2Q14140 314 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 MPP2Q14168 576 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 ELAVL1Q15717 326 aaKnown RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 NADK2Q4G0N4 442 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 B3GNTL1Q67FW5 361 aaPredicted RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 SLC6A19Q695T7 634 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 H3F3CQ6NXT2 135 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 SCIMPQ6UWF3 145 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 LINC00696Q6ZRV3 163 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 ZCCHC23Q6ZST2 131 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 PRICKLE2Q7Z3G6 844 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 CUZD1Q86UP6 607 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 TRIM42Q8IWZ5 723 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 C1orf52Q8N6N3 182 aaKnown RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 OR6Y1Q8NGX8 325 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 ELP5Q8TE02 316 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 CHTF18Q8WVB6 975 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 TANKQ92844 425 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 CHMP6Q96FZ7 201 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 CNDP1Q96KN2 507 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 LMF1Q96S06 567 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 MFRPQ9BY79 579 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 ALOXE3Q9BYJ1 711 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 SHCBP1LQ9BZQ2 653 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 PNO1Q9NRX1 252 aaKnown RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 TEX10Q9NXF1 929 aaPredicted RBP8.75□□□□□ -1.01
LDLR-211ENST00000560173 PTGFRNQ9P2B2 879 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 LRRK2Q5S007 2527 aa8.75□□□□□ -1.01
LDLR-211ENST00000560173 MYOCOSA0A1B0GUC4 107 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 ARHGAP10A1A4S6 786 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 GLOD5A6NK44 160 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 EBAG9O00559 213 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 AZIN1O14977 448 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 SORBS2O94875 1100 aaKnown RBP8.74□□□□□ -1.01
LDLR-211ENST00000560173 IFNA16P05015 189 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 CHRNGP07510 517 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 SERPINB3P29508 390 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 ARRB2P32121 409 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 SERPINB5P36952 375 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 STT3AP46977 705 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 GPR143P51810 404 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 MAPK12P53778 367 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 FOLH1Q04609 750 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 ZSCAN26Q16670 478 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 SPIN4Q56A73 249 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 ARL13AQ5H913 290 aaPredicted RBP8.74□□□□□ -1.01
LDLR-211ENST00000560173 CCNYL2Q5T2Q4 361 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 HHATQ5VTY9 493 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 CLEC6AQ6EIG7 209 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 OR52E8Q6IFG1 317 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 ATG14Q6ZNE5 492 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 Q6ZS92 163 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 TRIM46Q7Z4K8 759 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 CPLX4Q7Z7G2 160 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 OR4N5Q8IXE1 308 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 TMEM132CQ8N3T6 1108 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 KIF2BQ8N4N8 673 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 ZADH2Q8N4Q0 377 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 ANKS4BQ8N8V4 417 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 Q8NA96 180 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 APCDD1LQ8NCL9 501 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 B3GNT7Q8NFL0 401 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 OR14A16Q8NHC5 309 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 PTPMT1Q8WUK0 201 aaPredicted RBP8.74□□□□□ -1.01
LDLR-211ENST00000560173 SREK1Q8WXA9 508 aaKnown RBP8.74□□□□□ -1.01
LDLR-211ENST00000560173 PNPLA2Q96AD5 504 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 C11orf24Q96F05 449 aaPredicted RBP8.74□□□□□ -1.01
LDLR-211ENST00000560173 APIPQ96GX9 242 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 MAGEB18Q96M61 343 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 NPAS2Q99743 824 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 TRIM4Q9C037 500 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 RNF32Q9H0A6 362 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 EPS8L2Q9H6S3 715 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 WDR41Q9HAD4 459 aa8.74□□□□□ -1.01
LDLR-211ENST00000560173 KCNK13Q9HB14 408 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms