RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 MARCH7Q9H992 704 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 KCNK12Q9HB15 430 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 REV1Q9UBZ9 1251 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 LINC00854A0A1B0GVQ3 168 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 TMPRSS11DO60235 418 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 OR10H3O60404 316 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 SERPIND1P05546 499 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 ALOX5P09917 674 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 RHCEP18577 417 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 TNNI3P19429 210 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 CD72P21854 359 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 PPM1AP35813 382 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 MAPK12P53778 367 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 ZMAT1Q5H9K5 638 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 FAM129CQ86XR2 697 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 SDHCQ99643 169 aaPredicted RBP12.25□□□□□ -0.45
LDLR-207ENST00000558013 YIPF4Q9BSR8 244 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 NLNQ9BYT8 704 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 LHX9Q9NQ69 397 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 ANKMY1Q9P2S6 941 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 ANGPT4Q9Y264 503 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 PRUNE2Q8WUY3 3088 aa12.25□□□□□ -0.45
LDLR-207ENST00000558013 M0R3H8 397 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 SCAMP1O15126 338 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 PTPN2P17706 415 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 NR4A2P43354 598 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 SLC34A3Q8N130 599 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 TM4SF18Q96CE8 201 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 SLC6A18Q96N87 628 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 SIAEQ9HAT2 523 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 GPBP1L1Q9HC44 474 aaPredicted RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 WDR70Q9NW82 654 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 NFKBIL1Q9UBC1 381 aaPredicted RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 DKK3Q9UBP4 350 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 A0A1W2PS29 197 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 ANHXE9PGG2 379 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 KMOO15229 486 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 MFN2O95140 757 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 S100A5P33763 92 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 RPS19P39019 145 aaKnown RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 ZNF750Q32MQ0 723 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 ATAD3BQ5T9A4 648 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 PLAG1Q6DJT9 500 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 C6orf120Q7Z4R8 191 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 MMAAQ8IVH4 418 aaKnown RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 SLC7A5P1Q8MH63 180 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 SLC7A13Q8TCU3 470 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 PDXPQ96GD0 296 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 OPALINQ96PE5 141 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 BARHL1Q9BZE3 327 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 NXF2Q9GZY0 626 aaKnown RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 OR52A5Q9H2C5 316 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 ANKRA2Q9H9E1 313 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 HHATLQ9HCP6 504 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 CXXC1Q9P0U4 656 aaPredicted RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 PCDHGB6Q9Y5F9 930 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 MTCL1Q9Y4B5 1905 aaKnown RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 CXorf51AA0A1B0GTR3 108 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 C5orf58C9J3I9 102 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 HMGN4O00479 90 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 LCMT2O60294 686 aaKnown RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 KRT75O95678 551 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 HOXB3P14651 431 aaPredicted RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 UQCRC2P22695 453 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 PTX3P26022 381 aaPredicted RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 MXD1Q05195 221 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 SPDYE7PQ495Y7 208 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 CCBE1Q6UXH8 406 aaPredicted RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 TCEANCQ8N8B7 351 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 TFGQ92734 400 aaPredicted RBP12.24□□□□□ -0.45
LDLR-207ENST00000558013 TMEM203Q969S6 136 aa12.24□□□□□ -0.45
LDLR-207ENST00000558013 TLR4O00206 839 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 AP3D1O14617 1153 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 SNPHO15079 494 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 RGS5O15539 181 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 OR12D1P0DN82 309 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 ELAVL4P26378 380 aaKnown RBP12.23□□□□□ -0.45
LDLR-207ENST00000558013 BSGP35613 385 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 MAGEA8P43361 318 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 DBPQ10586 325 aaPredicted RBP12.23□□□□□ -0.45
LDLR-207ENST00000558013 FNDC3BQ53EP0 1204 aaKnown RBP12.23□□□□□ -0.45
LDLR-207ENST00000558013 C9orf64Q5T6V5 341 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 XAGE5Q8WWM1 108 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 TOX2Q96NM4 488 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 GPA33Q99795 319 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 NUAK2Q9H093 628 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 QRSL1Q9H0R6 528 aaKnown RBP12.23□□□□□ -0.45
LDLR-207ENST00000558013 SIRT3Q9NTG7 399 aaPredicted RBP12.23□□□□□ -0.45
LDLR-207ENST00000558013 CLN6Q9NWW5 311 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 MAFFQ9ULX9 164 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 PCDHGA4Q9Y5G9 962 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 GNRH1P01148 92 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 CLTBP09497 229 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 DDCP20711 480 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 AZGP1P25311 298 aaKnown RBP12.23□□□□□ -0.45
LDLR-207ENST00000558013 PRKAG1P54619 331 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 ST8SIA6P61647 398 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 TARDBPQ13148 414 aaKnown RBP eCLIP12.23□□□□□ -0.45
LDLR-207ENST00000558013 LRRC26Q2I0M4 334 aa12.23□□□□□ -0.45
LDLR-207ENST00000558013 BCL7AQ4VC05 210 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms