RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 SIGLEC12Q96PQ1 595 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 BARD1Q99728 777 aaKnown RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 UTP23Q9BRU9 249 aaKnown RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 DEFB126Q9BYW3 111 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 ACPTQ9BZG2 426 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 ROPN1BQ9BZX4 212 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 IQCGQ9H095 443 aaKnown RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 ROPN1Q9HAT0 212 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 MID1IP1Q9NPA3 183 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 OXSMQ9NWU1 459 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 TEX10Q9NXF1 929 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 AHSPQ9NZD4 102 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 MID2Q9UJV3 735 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 COPG1Q9Y678 874 aaKnown RBP12.79□□□□□ -0.36
SHMT2-219ENST00000555563 CLCA3PQ9Y6N3 262 aa12.79□□□□□ -0.36
SHMT2-219ENST00000555563 ARHGAP10A1A4S6 786 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 WASHC1A8K0Z3 465 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 C17orf105B2RV13 164 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 PRKNO60260 465 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-219ENST00000555563 DDAH2O95865 285 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 HSD3B1P14060 373 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 HSD3B2P26439 372 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 CD96P40200 585 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 STT3AP46977 705 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 MAPK12P53778 367 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 FOXA1P55317 472 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 PLIN5Q00G26 463 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 OC90Q02509 493 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-219ENST00000555563 ZNF844Q08AG5 666 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 MRPL49Q13405 166 aaKnown RBP12.78□□□□□ -0.36
SHMT2-219ENST00000555563 NR6A1Q15406 480 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 OR1C1Q15619 314 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 INAQ16352 499 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 CFAP157Q5JU67 520 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 CCNYL2Q5T2Q4 361 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 ZNF468Q5VIY5 522 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-219ENST00000555563 LIPMQ5VYY2 423 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 OR52E8Q6IFG1 317 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 RPUSD3Q6P087 351 aaKnown RBP12.78□□□□□ -0.36
SHMT2-219ENST00000555563 FAM180AQ6UWF9 173 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 PAGE2Q7Z2X7 111 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 C10orf107Q8IVU9 208 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 ARMC10Q8N2F6 343 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 C1orf52Q8N6N3 182 aaKnown RBP12.78□□□□□ -0.36
SHMT2-219ENST00000555563 ZNF321PQ8N8H1 164 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 SUN3Q8TAQ9 357 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 SLC2A12Q8TD20 617 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 TANKQ92844 425 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 UCN3Q969E3 161 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 DGAT2Q96PD7 388 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 TMEM109Q9BVC6 243 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 OR8D2Q9GZM6 311 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 WDR41Q9HAD4 459 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 SLC17A7Q9P2U7 560 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 PLLPQ9Y342 182 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 TIMM22Q9Y584 194 aa12.78□□□□□ -0.36
SHMT2-219ENST00000555563 A0A1W2PS29 197 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 ULK1O75385 1050 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 SPAG7O75391 227 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 COX7A2P14406 83 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 ALOX15P16050 662 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-219ENST00000555563 TNNI3P19429 210 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 NAA20P61599 178 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 HMGCS1Q01581 520 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 KRT71Q3SY84 523 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF766Q5HY98 468 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 NDUFAF5Q5TEU4 345 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 SPINK14Q6IE38 97 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 SCIMPQ6UWF3 145 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 DGAT2L6Q6ZPD8 337 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 MORN4Q8NDC4 146 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 SREK1Q8WXA9 508 aaKnown RBP12.77□□□□□ -0.37
SHMT2-219ENST00000555563 FAM111AQ96PZ2 611 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 TAAR6Q96RI8 345 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 HES7Q9BYE0 225 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 TNFRSF12AQ9NP84 129 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 AGPAT4Q9NRZ5 378 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 NMRK1Q9NWW6 199 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 VPS29Q9UBQ0 182 aa12.77□□□□□ -0.37
SHMT2-219ENST00000555563 CNTRLQ7Z7A1 2325 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 NBASA2RRP1 2371 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 CCDC151A5D8V7 595 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 FCHO1O14526 889 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 PGRMC2O15173 223 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 OR10H2O60403 315 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 ITGA10O75578 1167 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 NEURL1O76050 574 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 ZFAND5O76080 213 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 GPR75O95800 540 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 CREB1P16220 341 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 PMP22Q01453 160 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 HSDL2Q6YN16 418 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 C16orf47Q6ZP98 133 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-219ENST00000555563 ST13P4Q8IZP2 240 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-219ENST00000555563 MMP21Q8N119 569 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 BCORP1Q8N888 145 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 GBP7Q8N8V2 638 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-219ENST00000555563 C7orf57Q8NEG2 295 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 DOK4Q8TEW6 326 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF721Q8TF20 911 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms