RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 ITGA2P17301 1181 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 LIM2P55344 173 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 IQCCQ4KMZ1 466 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 SPANXN2Q5MJ10 180 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 REEP3Q6NUK4 255 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 GATAD2AQ86YP4 633 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 LACC1Q8IV20 430 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 MBNL1Q9NR56 388 aaKnown RBP13□□□□□ -0.33
PRPF40B-209ENST00000548825 ACER3Q9NUN7 267 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 ZNF226Q9NYT6 803 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 AHSPQ9NZD4 102 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 GMEB1Q9Y692 573 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 SNX4O95219 450 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 DDX5P17844 614 aaKnown RBP13□□□□□ -0.33
PRPF40B-209ENST00000548825 GPR19Q15760 415 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 IQCHQ86VS3 1027 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 TMEFF1Q8IYR6 380 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 OR6Q1Q8NGQ2 317 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 CHFRQ96EP1 664 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 NEURL2Q9BR09 285 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 FNDC11Q9BVV2 318 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 C1GALT1Q9NS00 363 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 POFUT2Q9Y2G5 429 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 WDR37Q9Y2I8 494 aa13□□□□□ -0.33
PRPF40B-209ENST00000548825 LOC110117498-PIK3R3F6TDL0 507 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 NDUFS4O43181 175 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SSX4O60224 188 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SULT1C4O75897 302 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 PTX3P26022 381 aaPredicted RBP12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SSTR4P31391 388 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 CAV3P56539 151 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 KCNC3Q14003 757 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SEC23BQ15437 767 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 CDKL4Q5MAI5 379 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 CYP4Z2PQ8N1L4 340 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 HDDC3Q8N4P3 179 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 DYNC2LI1Q8TCX1 351 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 CHPT1Q8WUD6 406 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 POLR2J2Q9GZM3 115 aaKnown RBP12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 KLHL31Q9H511 634 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 BRF2Q9HAW0 419 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 TIGARQ9NQ88 270 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SERGEFQ9UGK8 458 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 PPIL1Q9Y3C6 166 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 TLR4O00206 839 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 UGT2B17O75795 530 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SOD1P00441 154 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 XKP51811 444 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SYT6Q5T7P8 510 aaPredicted RBP12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 METTL2BQ6P1Q9 378 aaKnown RBP12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 TMEM107Q6UX40 140 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 ERN2Q76MJ5 926 aaKnown RBP12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SLC9B2Q86UD5 537 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 OR10G6Q8NH81 332 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 SLC9A6Q92581 669 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 C16orf58Q96GQ5 468 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 DMRTB1Q96MA1 342 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 BHLHE41Q9C0J9 482 aaPredicted RBP12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 MVB12BQ9H7P6 319 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 PSORS1C1Q9UIG5 152 aa12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 COL4A4P53420 1690 aaPredicted RBP12.99□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3DA0A087WVF3 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3IA0A087WXS9 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3EA0A087X179 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3KA0A087X1G2 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3FA6NER0 549 aaPredicted RBP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 EFCAB10A6NFE3 127 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 CPSF4LA6NMK7 179 aaKnown RBP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3LB9A6J9 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 EIF3FO00303 357 aaPredicted RBP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 NARSO43776 548 aaKnown RBP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 UGDHO60701 494 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 FHP07954 510 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3HP0C7X1 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 P2RY2P41231 377 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 PIK3CBP42338 1070 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 MVDP53602 400 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 CLDN2P57739 230 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 PUM1Q14671 1186 aaKnown RBP eCLIP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 HEPACAMQ14CZ8 416 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 SNAPC1Q16533 368 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 FAM78AQ5JUQ0 283 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3GQ6DHY5 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 FAM109BQ6ICB4 259 aaPredicted RBP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3CQ6IPX1 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 ADGRD2Q7Z7M1 963 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 ADGRF3Q8IZF5 1079 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBC1D3Q8IZP1 549 aaPredicted RBP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 DEPDC4Q8N2C3 294 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 FRMD1Q8N878 549 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 CAPSLQ8WWF8 208 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 YIPF6Q96EC8 236 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TBX5Q99593 518 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 TMEM106CQ9BVX2 250 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 OR51I1Q9H343 314 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 CNIH4Q9P003 139 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 DPP7Q9UHL4 492 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 YARS2Q9Y2Z4 477 aaKnown RBP12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 IFT52Q9Y366 437 aa12.98□□□□□ -0.33
PRPF40B-209ENST00000548825 SLC9A3R1O14745 358 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms