RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 ZNF717Q9BY31 904 aaPredicted RBP16.1■□□□□ 0.17
CHMP1A-205ENST00000548650 DEFB127Q9H1M4 99 aa16.1■□□□□ 0.17
CHMP1A-205ENST00000548650 COQ3Q9NZJ6 369 aa16.1■□□□□ 0.17
CHMP1A-205ENST00000548650 ACOT9Q9Y305 439 aa16.1■□□□□ 0.17
CHMP1A-205ENST00000548650 TSC22D4Q9Y3Q8 395 aa16.1■□□□□ 0.17
CHMP1A-205ENST00000548650 A0A087X1B8 175 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 ESYT3A0FGR9 886 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 SYCE1LA8MT33 242 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 KLK8O60259 260 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 PRKRAO75569 313 aaKnown RBP16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 CCL3P10147 92 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 COX7A2P14406 83 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 SSTR2P30874 369 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 CASQ1P31415 396 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 PIK3CBP42338 1070 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 HNRNPH2P55795 449 aaKnown RBP16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 PLIN5Q00G26 463 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 OR4C11Q6IEV9 310 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 OPN5Q6U736 354 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 DGAT2L6Q6ZPD8 337 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 RGS9BPQ6ZS82 235 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 OR4N5Q8IXE1 308 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 ZCCHC7Q8N3Z6 543 aaKnown RBP16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 NUBPLQ8TB37 319 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 C14orf79Q96F83 325 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 SGCZQ96LD1 299 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 DGAT2Q96PD7 388 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 MTERF1Q99551 399 aaKnown RBP16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 FAM173AQ9BQD7 235 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 PRM3Q9NNZ6 103 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 SNX15Q9NRS6 342 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 ADGRE2Q9UHX3 823 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 EXPH5Q8NEV8 1989 aa16.09■□□□□ 0.17
CHMP1A-205ENST00000548650 CCDC189A1A4V9 331 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 LRRC14BA6NHZ5 514 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 HRKO00198 91 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 NADKO95544 446 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 IGHG3P01860 377 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 C2P06681 752 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 IGFBP2P18065 325 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 POU3F2P20265 443 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 DNASE1L1P49184 302 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 RAP1GDS1P52306 607 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 KRTAP10-9P60411 292 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 ETF1P62495 437 aaKnown RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 FOLH1Q04609 750 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 FOXO1Q12778 655 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 ASPHQ12797 758 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 SLAMF1Q13291 335 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 MPEG1Q2M385 716 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 UBAP2Q5T6F2 1119 aaKnown RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 NDUFAF5Q5TEU4 345 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 C18orf63Q68DL7 685 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 PAOXQ6QHF9 649 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 CEP128Q6ZU80 1094 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 CCDC91Q7Z6B0 441 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 GPR180Q86V85 440 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 SLC22A16Q86VW1 577 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 MYLK4Q86YV6 388 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 FAM109AQ8N4B1 249 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 TMEM251Q8N6I4 163 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 RGMAQ96B86 450 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 SENP5Q96HI0 755 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 FBXL20Q96IG2 436 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 RPF2Q9H7B2 306 aaKnown RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 IL1RL2Q9HB29 575 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 NPDC1Q9NQX5 325 aaPredicted RBP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 SACM1LQ9NTJ5 587 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 ZDHHC18Q9NUE0 388 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 MS4A12Q9NXJ0 267 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 PHF11Q9UIL8 331 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 RNF6Q9Y252 685 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 ATG4BQ9Y4P1 393 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 CELSR1Q9NYQ6 3014 aa16.08■□□□□ 0.16
CHMP1A-205ENST00000548650 A0A0A6YYD5 115 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 H0YIV9 168 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 GFAPP14136 432 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 CNR1P21554 472 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 CHRNB4P30926 498 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 MAGEA5P43359 124 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 ARFIP1P53367 373 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 ALDH18A1P54886 795 aaKnown RBP16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 RPS13P62277 151 aaKnown RBP16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 TFF3Q07654 80 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 PFKFB4Q16877 469 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 FAM83EQ2M2I3 478 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 HYAL4Q2M3T9 481 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 PIGGQ5H8A4 983 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 MROH9Q5TGP6 573 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 LIPJQ5W064 366 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 TMEM211Q6ICI0 200 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 MRM1Q6IN84 353 aaKnown RBP16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 ADGRD1Q6QNK2 874 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 LYPD8Q6UX82 237 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 SYT10Q6XYQ8 523 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 MEX3BQ6ZN04 569 aaKnown RBP16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 FAM47EQ6ZV65 393 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 C7orf57Q8NEG2 295 aa16.07■□□□□ 0.16
CHMP1A-205ENST00000548650 ASB5Q8WWX0 329 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms