RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RFPL3SP0C7P2 107 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 CD53P19397 219 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 CTSSP25774 331 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 GDF1P27539 372 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 CERS1P27544 350 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 SPANXN3Q5MJ09 141 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 NSUN5P2Q63ZY6 315 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 ABHD17CQ6PCB6 329 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 SBSNQ6UWP8 590 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 SLCO4C1Q6ZQN7 724 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 TMEM139Q8IV31 216 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 CNTN4Q8IWV2 1026 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 RASGEF1CQ8N431 466 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 NKAPQ8N5F7 415 aaKnown RBP15.56■□□□□ 0.08
VPS29-204ENST00000548259 ZNF321PQ8N8H1 164 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 NAXEQ8NCW5 288 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 SIMC1Q8NDZ2 872 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 LINC01560Q8TB33 94 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 ISL2Q96A47 359 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 MAGOHBQ96A72 148 aaKnown RBP15.56■□□□□ 0.08
VPS29-204ENST00000548259 RBM18Q96H35 190 aaKnown RBP15.56■□□□□ 0.08
VPS29-204ENST00000548259 ZNF597Q96LX8 424 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 DACH2Q96NX9 599 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 DGAT2Q96PD7 388 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 CSF3RQ99062 836 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 BDH2Q9BUT1 245 aa15.56■□□□□ 0.08
VPS29-204ENST00000548259 EIF3LQ9Y262 564 aaKnown RBP15.56■□□□□ 0.08
VPS29-204ENST00000548259 HRNRQ86YZ3 2850 aaPredicted RBP15.56■□□□□ 0.08
VPS29-204ENST00000548259 MYOCOSA0A1B0GUC4 107 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 CAPN14A8MX76 684 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 SMPD2O60906 423 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 ERN1O75460 977 aaKnown RBP15.55■□□□□ 0.08
VPS29-204ENST00000548259 TRAPPC6AO75865 159 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 LY6G6DO95868 133 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 IL18BPO95998 194 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 GABRB3P28472 473 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 GCKP35557 465 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 DUSP8Q13202 625 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 RCAN2Q14206 197 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 PPP1R3AQ16821 1122 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 ADPRMQ3LIE5 342 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 CAPN12Q6ZSI9 719 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 SLC29A4Q7RTT9 530 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 PPIL6Q8IXY8 311 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 SMPDL3BQ92485 455 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 PIGTQ969N2 578 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 SENP5Q96HI0 755 aaPredicted RBP15.55■□□□□ 0.08
VPS29-204ENST00000548259 EPB41L4BQ9H329 900 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 SH2D2AQ9NP31 389 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 GPRC5BQ9NZH0 403 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 CAMK2AQ9UQM7 478 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 OARD1Q9Y530 152 aa15.55■□□□□ 0.08
VPS29-204ENST00000548259 IQANK1A0A1B0GTG1 560 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 CD8B2A6NJW9 211 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 TP53I11O14683 189 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 CLGNO14967 610 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 ZNF354AO60765 605 aaPredicted RBP15.54■□□□□ 0.08
VPS29-204ENST00000548259 LDB3O75112 727 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 C1QAP02745 245 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 HRGP04196 525 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 PCSK6P29122 969 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 ZNF136P52737 540 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 PLIN5Q00G26 463 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 HIST2H2ACQ16777 129 aaPredicted RBP15.54■□□□□ 0.08
VPS29-204ENST00000548259 Q5PR19 223 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 HIST2H2AA3Q6FI13 130 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 SYDE1Q6ZW31 735 aaPredicted RBP15.54■□□□□ 0.08
VPS29-204ENST00000548259 ADAMTSL2Q86TH1 951 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 TAGAPQ8N103 731 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 LRRC75A-AS1Q8N1F1 130 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 ZNF721Q8TF20 911 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 CERS2Q96G23 380 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 COX4I2Q96KJ9 171 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 TRIB1Q96RU8 372 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 TIMP4Q99727 224 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 MDFIQ99750 246 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 TBCDQ9BTW9 1192 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 PRDM14Q9GZV8 571 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 EHD1Q9H4M9 534 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 CNOT10Q9H9A5 744 aaKnown RBP15.54■□□□□ 0.08
VPS29-204ENST00000548259 NDRG3Q9UGV2 375 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 VPS13CQ709C8 3753 aa15.54■□□□□ 0.08
VPS29-204ENST00000548259 ANKRD33BA6NCL7 494 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 LRRC3CA6NJW4 275 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 GOLGA6L6A8MZA4 724 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 SNX4O95219 450 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 ETHE1O95571 254 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 STT3AP46977 705 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 CPA2P48052 419 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 RPP38P78345 283 aaKnown RBP15.53■□□□□ 0.08
VPS29-204ENST00000548259 CRYZQ08257 329 aaKnown RBP15.53■□□□□ 0.08
VPS29-204ENST00000548259 POU4F3Q15319 338 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 KCTD19Q17RG1 926 aaPredicted RBP15.53■□□□□ 0.08
VPS29-204ENST00000548259 PAGE2BQ5JRK9 111 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 PRIMA1Q86XR5 153 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 TCAIMQ8N3R3 496 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 NAT8LQ8N9F0 302 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 TRIM58Q8NG06 486 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 OR10G3Q8NGC4 313 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 FBXL20Q96IG2 436 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms