RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 IL1RL2Q9HB29 575 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 INTS7Q9NVH2 962 aaKnown RBP5.03□□□□□ -1.6
USP28-213ENST00000544967 AGO1Q9UL18 857 aaKnown RBP5.03□□□□□ -1.6
USP28-213ENST00000544967 CHTOPQ9Y3Y2 248 aaKnown RBP5.03□□□□□ -1.6
USP28-213ENST00000544967 HSPB11Q9Y547 144 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ALG5Q9Y673 324 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 hCG_1807616A0A1W2PRN6 198 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 HYKKA2RU49 373 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ZNF98A6NK75 572 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 BTN3A3O00478 584 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 APOC1P02654 83 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 HOXB9P17482 250 aaPredicted RBP5.03□□□□□ -1.6
USP28-213ENST00000544967 RHCEP18577 417 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 CBLP22681 906 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ACVR1Q04771 509 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 DUSP4Q13115 394 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 CSHL1Q14406 222 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 SLC9A5Q14940 896 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ATP6AP1LQ52LC2 224 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 HECTD2Q5U5R9 776 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ANKS6Q68DC2 871 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ENPP6Q6UWR7 440 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 HSD17B13Q7Z5P4 300 aaPredicted RBP5.03□□□□□ -1.6
USP28-213ENST00000544967 TMEM179BQ7Z7N9 219 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ACOT1Q86TX2 421 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 UBALD2Q8IYN6 164 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 TP53I13Q8NBR0 393 aaPredicted RBP5.03□□□□□ -1.6
USP28-213ENST00000544967 UXS1Q8NBZ7 420 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 FANK1Q8TC84 345 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 GGHQ92820 318 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 FAM162AQ96A26 154 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 SLC25A46Q96AG3 418 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 CCDC120Q96HB5 630 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ATOH8Q96SQ7 321 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ZNF416Q9BWM5 594 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 PRR14Q9BWN1 585 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 GSX2Q9BZM3 304 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 DERL2Q9GZP9 239 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 FN3KQ9H479 309 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 MID1IP1Q9NPA3 183 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 PCDHB16Q9NRJ7 776 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 C1orf109Q9NX04 203 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 OSER1Q9NX31 292 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 CYB5R1Q9UHQ9 305 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 ADAM30Q9UKF2 790 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 PCDHGA6Q9Y5G7 932 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 TIMM13Q9Y5L4 95 aaPredicted RBP5.03□□□□□ -1.6
USP28-213ENST00000544967 NPTNQ9Y639 398 aa5.03□□□□□ -1.6
USP28-213ENST00000544967 MFSD2BA6NFX1 497 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 A6NLC8 198 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 WASHC1A8K0Z3 465 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 A8MXK9 166 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NPIPB8E9PQR5 432 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 KPNA3O00505 521 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 NPC1O15118 1278 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PLA2G10O15496 165 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR5F1O95221 314 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 LALBAP00709 142 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR4Q2P0C623 313 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ARSBP15848 533 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CEBPBP17676 345 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 DDCP20711 480 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OGNP20774 298 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 FSHRP23945 695 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 AKT1P31749 480 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 DGKQP52824 942 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SSTP61278 116 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 POLR2GP62487 172 aaKnown RBP eCLIP5.02□□□□□ -1.61
USP28-213ENST00000544967 CDO1Q16878 200 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 GOLGA7BQ2TAP0 167 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ZNF628Q5EBL2 1059 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CLEC6AQ6EIG7 209 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 KIAA1324Q6UXG2 1013 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 AHSA2Q719I0 299 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NLRC3Q7RTR2 1065 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SERPINA11Q86U17 422 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 IFNEQ86WN2 208 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 C12orf29Q8N999 325 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ZSCAN1Q8NBB4 408 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SETD7Q8WTS6 366 aaKnown RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 ST8SIA4Q92187 359 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 YIPF5Q969M3 257 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PLD4Q96BZ4 506 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 OR2M2Q96R28 347 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MYADMQ96S97 322 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 NPY6RQ99463 290 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ZBTB18Q99592 522 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 FAM83CQ9BQN1 747 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 SLC19A3Q9BZV2 496 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 CLEC4MQ9H2X3 399 aaPredicted RBP5.02□□□□□ -1.61
USP28-213ENST00000544967 FZD3Q9NPG1 666 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 KRT84Q9NSB2 600 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 ERVK13-1Q9NX77 482 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 GPRC5BQ9NZH0 403 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MPP6Q9NZW5 540 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MUTYHQ9UIF7 546 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 MAB21L2Q9Y586 359 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PCDHB9Q9Y5E1 797 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PCDHGA2Q9Y5H1 932 aa5.02□□□□□ -1.61
USP28-213ENST00000544967 PLXNA2O75051 1894 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms