RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 DSTNP60981 165 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 GALK2Q01415 458 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 FCN2Q15485 313 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 NDUFAF5Q5TEU4 345 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 OLFML2AQ68BL7 652 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 ADNP2Q6IQ32 1131 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 C3orf58Q8NDZ4 430 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 ELMOD3Q96FG2 381 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 CMTM7Q96FZ5 175 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 SOHLH2Q9NX45 425 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 TAS2R3Q9NYW6 316 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 OR10H1Q9Y4A9 318 aa13.64□□□□□ -0.23
LIMS1-215ENST00000544547 NEDD8-MDP1E9PL57 170 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 J3KTA2 159 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 NCR1O76036 304 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 SPAM1P38567 509 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 SNTB2Q13425 540 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 ATXN7L3Q14CW9 347 aaPredicted RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 EIF4HQ15056 248 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 KIAA0319Q5VV43 1072 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 NCEH1Q6PIU2 408 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 LRRTM3Q86VH5 581 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 MEX3DQ86XN8 651 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 OR8J1Q8NGP2 316 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 UPF1Q92900 1129 aaKnown RBP eCLIP13.63□□□□□ -0.231e-8■■■□□ 16.4
LIMS1-215ENST00000544547 TESCQ96BS2 214 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 PIP5K1AQ99755 562 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 C17orf62Q9BQA9 187 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 SLITRK2Q9H156 845 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 MAGEH1Q9H213 219 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 SLC6A15Q9H2J7 730 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 CARS2Q9HA77 564 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 ATP13A2Q9NQ11 1180 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 GKN1Q9NS71 199 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 NARSO43776 548 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 MRPS14O60783 128 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 CLDN7O95471 211 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 ITGBL1O95965 494 aaPredicted RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 TOR2AQ5JU69 321 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 RNF44Q7L0R7 432 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 IQCHQ86VS3 1027 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 CCDC36Q8IYA8 594 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 ST8SIA2Q92186 375 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 BOCQ9BWV1 1114 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 PCDHB16Q9NRJ7 776 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 TLR6Q9Y2C9 796 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 PCDHB11Q9Y5F2 797 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 FKTNO75072 461 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 AOC2O75106 756 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 BMP1P13497 986 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 SLC19A1P41440 591 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 RRAS2P62070 204 aaPredicted RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 ZNHIT3Q15649 155 aaPredicted RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 SWI5Q1ZZU3 235 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 ZNF791Q3KP31 576 aaPredicted RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 VARS2Q5ST30 1063 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 OR2G6Q5TZ20 316 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 FAM46CQ5VWP2 391 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 SUSD1Q6UWL2 747 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 BCDIN3DQ7Z5W3 292 aaKnown RBP13.63□□□□□ -0.23
LIMS1-215ENST00000544547 PARGQ86W56 976 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 CD200R1Q8TD46 325 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 OR51B5Q9H339 312 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 EVA1BQ9NVM1 165 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 TNFRSF10DQ9UBN6 386 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 CLEC2DQ9UHP7 191 aa13.63□□□□□ -0.23
LIMS1-215ENST00000544547 OR10H2O60403 315 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 RPL17P18621 184 aaKnown RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 KELP23276 732 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 F8A1P23610 371 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 CAMK1Q14012 370 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 MBTPS1Q14703 1052 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 LRRN1Q6UXK5 716 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 C1orf216Q8TAB5 229 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 AP2M1Q96CW1 435 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 NXPE2Q96DL1 559 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 SPATA5L1Q9BVQ7 753 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 IMP3Q9NV31 184 aaKnown RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 CUEDC1Q9NWM3 386 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 VNN3Q9NY84 501 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 COPZ2Q9P299 210 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 MGAT4CQ9UBM8 478 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 HCN1O60741 890 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 H2AFB2P0C5Z0 115 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 SERINC3Q13530 473 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 HAGHLQ6PII5 290 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 FAM180AQ6UWF9 173 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 AGMOQ6ZNB7 445 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 CREB3L2Q70SY1 520 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 BEND7Q8N7W2 519 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 OR51G2Q8NGK0 314 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 CREB3L1Q96BA8 519 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 SGTBQ96EQ0 304 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 NMNAT1Q9HAN9 279 aaPredicted RBP13.62□□□□□ -0.23
LIMS1-215ENST00000544547 C3orf14Q9HBI5 128 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 SLC39A1Q9NY26 324 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 DEC1Q9P2X7 70 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 KLK4Q9Y5K2 254 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 E2F3O00716 465 aa13.62□□□□□ -0.23
LIMS1-215ENST00000544547 SLC22A5O76082 557 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms