RNA–Protein interactions for RNA: ENST00000543525.3

PPME1-208, Transcript of protein phosphatase methylesterase 1, human

TSL 1 (best)

Gene PPME1, Length 1,928 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPME1-208	ENST00000543525	PRRT4	C9JH25	899 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	TLR4	O00206	839 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	FAAH	O00519	579 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	KIAA0355	O15063	1070 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	AQP9	O43315	295 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	MFN2	O95140	757 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	ERG	P11308	486 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	EPCAM	P16422	314 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	CTNNB1	P35222	781 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	UGT2B15	P54855	530 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	SNRPG	P62308	76 aa	Known RBP	12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	CYP4F2	P78329	520 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	PUM1	Q14671	1186 aa	Known RBP eCLIP	12.82	□□□□□ -0.36	4e-7	■■■□□ 16.2
PPME1-208	ENST00000543525	LRRC26	Q2I0M4	334 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	DCST1	Q5T197	706 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	PLAG1	Q6DJT9	500 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	ADAMTSL4	Q6UY14	1074 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	ERN2	Q76MJ5	926 aa	Known RBP	12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	C6orf120	Q7Z4R8	191 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	LYSMD2	Q8IV50	215 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	ADGRF3	Q8IZF5	1079 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	POF1B	Q8WVV4	589 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	APOBEC4	Q8WW27	367 aa	Known RBP	12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	RASSF5	Q8WWW0	418 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	TMEM19	Q96HH6	336 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	GUCD1	Q96NT3	240 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	TEFM	Q96QE5	360 aa	Known RBP	12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	F2RL3	Q96RI0	385 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	ZNF607	Q96SK3	696 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	CDADC1	Q9BWV3	514 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	PITHD1	Q9GZP4	211 aa	Predicted RBP	12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	IL23A	Q9NPF7	189 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	WASH6P	Q9NQA3	447 aa		12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	SCHIP1	Q9P0W5	487 aa	Predicted RBP	12.82	□□□□□ -0.36
PPME1-208	ENST00000543525	DSPP	Q9NZW4	1301 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	PTPRS	Q13332	1948 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	TRBV4-1	A0A0J9YWV2	114 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	FFAR1	O14842	300 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	MED26	O95402	600 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	H1F0	P07305	194 aa	Known RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	BMPR1A	P36894	532 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	LIMK1	P53667	647 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	LIM2	P55344	173 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	RPS26	P62854	115 aa	Known RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	REEP5	Q00765	189 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	FOXD4	Q12950	439 aa	Predicted RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	ILK	Q13418	452 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	MED22	Q15528	200 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	TST	Q16762	297 aa	Known RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	MEDAG	Q5VYS4	303 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	NUDT13	Q86X67	352 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	WDR36	Q8NI36	951 aa	Known RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	SMPDL3A	Q92484	453 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	RGMA	Q96B86	450 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	ZBED6CL	Q96FA7	236 aa	Predicted RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	ZNF764	Q96H86	408 aa	Predicted RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	COX14	Q96I36	57 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	LRRC3B	Q96PB8	259 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	MGLL	Q99685	303 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	CENPO	Q9BU64	300 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	ZNF717	Q9BY31	904 aa	Predicted RBP	12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	RACGAP1	Q9H0H5	632 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	POLE4	Q9NR33	117 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	PRKAB1	Q9Y478	270 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	ALPK3	Q96L96	1907 aa		12.81	□□□□□ -0.36
PPME1-208	ENST00000543525	PNMA8C	A0A1B0GUJ8	204 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	TMEM221	A6NGB7	291 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	CCRL2	O00421	344 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	RTCA	O00442	366 aa	Known RBP	12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	TBX1	O43435	398 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	FRK	P42685	505 aa	Predicted RBP	12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	SLC15A1	P46059	708 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	SLC6A11	P48066	632 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	PCBP4	P57723	403 aa	Known RBP	12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	KRR1	Q13601	381 aa	Known RBP	12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	ZNF697	Q5TEC3	545 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	SLX4IP	Q5VYV7	408 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	C19orf48	Q6RUI8	117 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	DSG4	Q86SJ6	1040 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	LRRTM4	Q86VH4	590 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	ETFBKMT	Q8IXQ9	262 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	GPR32P1	Q8NGA4	272 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	OR5K2	Q8NHB8	316 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	SPPL3	Q8TCT6	385 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	DHRS1	Q96LJ7	313 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	ZNF354B	Q96LW1	612 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	ROGDI	Q9GZN7	287 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	SLAMF7	Q9NQ25	335 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	C11orf16	Q9NQ32	467 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	ANKMY1	Q9P2S6	941 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	DEC1	Q9P2X7	70 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	ADAM29	Q9UKF5	820 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	SLC6A14	Q9UN76	642 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	CFL2	Q9Y281	166 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	C1QTNF3-AMACR	E9PGA6	284 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	NDUFS4	O43181	175 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	KIAA0513	O60268	411 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	OR10H3	O60404	316 aa		12.8	□□□□□ -0.36
PPME1-208	ENST00000543525	NFATC1	O95644	943 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms