RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FAM32AQ9Y421 112 aaKnown RBP15.48■□□□□ 0.07
COL4A1-204ENST00000543140 ATG4BQ9Y4P1 393 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 COLEC10Q9Y6Z7 277 aa15.48■□□□□ 0.07
COL4A1-204ENST00000543140 PCDHGA12O60330 932 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 NOL3O60936 208 aaKnown RBP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 RECKO95980 971 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 TFPTP0C1Z6 253 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ITGA2P17301 1181 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 NDUFV2P19404 249 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 CD247P20963 164 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 FRKP42685 505 aaPredicted RBP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 MAP2K4P45985 399 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 PRKAG1P54619 331 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 EMX1Q04741 257 aaPredicted RBP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 GRSF1Q12849 480 aaKnown RBP eCLIP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ELOAQ14241 798 aaKnown RBP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 PUM1Q14671 1186 aaKnown RBP eCLIP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 SLC9A5Q14940 896 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 OLIG3Q7RTU3 272 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 AMIGO1Q86WK6 493 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ACOT4Q8N9L9 421 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 BMFQ96LC9 184 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 AMDHD1Q96NU7 426 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 PIP5K1AQ99755 562 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 TIMMDC1Q9NPL8 285 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 SLC35C2Q9NQQ7 365 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 PRDM7Q9NQW5 492 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ACER3Q9NUN7 267 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ZNF624Q9P2J8 865 aaPredicted RBP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 SCN2AQ99250 2005 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 FANCMQ8IYD8 2048 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 A0A1W2PR48 441 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 A0A1W2PS29 197 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ANHXE9PGG2 379 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 RASGRP1O95267 797 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ZBTB11O95625 1053 aaPredicted RBP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 C8orf89P0DMQ9 161 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 PCMT1P22061 227 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 CERS1P27544 350 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ACTR1BP42025 376 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 XCR1P46094 333 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 NCBP2P52298 156 aaKnown RBP eCLIP15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ACTR1AP61163 376 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 NPTX1Q15818 432 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 MICAQ29983 383 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 TMEM35AQ53FP2 167 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ZBTB46Q86UZ6 589 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 ZNF540Q8NDQ6 660 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 YIPF4Q9BSR8 244 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 FBRSQ9HAH7 460 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 TRPC4Q9UBN4 977 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 PCDHGA6Q9Y5G7 932 aa15.47■□□□□ 0.07
COL4A1-204ENST00000543140 BTN3A3O00478 584 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 FAM20BO75063 409 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 CHRM5P08912 532 aaPredicted RBP15.46■□□□□ 0.07
COL4A1-204ENST00000543140 OR12D1P0DN82 309 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 HIST1H1TP22492 207 aaPredicted RBP15.46■□□□□ 0.07
COL4A1-204ENST00000543140 CMPK1P30085 196 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 KRT20P35900 424 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 TPMTP51580 245 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 RPS6KA3P51812 740 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 NFATC4Q14934 902 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 MAPK11Q15759 364 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 C18orf63Q68DL7 685 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 ABHD17CQ6PCB6 329 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 HMGN2P46Q86SG4 172 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 NATD1Q8N6N6 113 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 FLCNQ8NFG4 579 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 XAGE5Q8WWM1 108 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 ZNF566Q969W8 418 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 BBS4Q96RK4 519 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 A4GALTQ9NPC4 353 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 SCN3BQ9NY72 215 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 HSPE1-MOB4S4R3N1 261 aa15.46■□□□□ 0.07
COL4A1-204ENST00000543140 MAN2B1O00754 1011 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 SLC28A2O43868 658 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 WBP4O75554 376 aaKnown RBP15.46■□□□□ 0.06
COL4A1-204ENST00000543140 GADD45GO95257 159 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 IFNW1P05000 195 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 DRD2P14416 443 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF182P17025 639 aaPredicted RBP15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ATP5A1P25705 553 aaKnown RBP15.46■□□□□ 0.06
COL4A1-204ENST00000543140 NUP107P57740 925 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 SLC35A2P78381 396 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ABATP80404 500 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 GPR19Q15760 415 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 SYPL1Q16563 259 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 TJAP1Q5JTD0 557 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 CCDC81Q6ZN84 652 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ENTHD1Q8IYW4 607 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 MUL1Q969V5 352 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 GTPBP3Q969Y2 492 aaKnown RBP15.46■□□□□ 0.06
COL4A1-204ENST00000543140 HRASLS5Q96KN8 279 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 WDR92Q96MX6 357 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 CSF3RQ99062 836 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 FAIM2Q9BWQ8 316 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 GABARAPL3Q9BY60 117 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 KIR3DX1Q9H7L2 352 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ACSS1Q9NUB1 689 aaPredicted RBP15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ZCCHC3Q9NUD5 404 aaKnown RBP15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms