RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 MAVSQ7Z434 540 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 CPEB2Q7Z5Q1 589 aaKnown RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 CLNKQ7Z7G1 428 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 MRGPREQ86SM8 312 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 ST13P4Q8IZP2 240 aaPredicted RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 TMEM102Q8N9M5 508 aaPredicted RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 ANKRD9Q96BM1 317 aaPredicted RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 RBM18Q96H35 190 aaKnown RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 PPP1R36Q96LQ0 422 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 LPAR4Q99677 370 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 TUBB6Q9BUF5 446 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 ALOXE3Q9BYJ1 711 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 RBCK1Q9BYM8 510 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 NSRP1Q9H0G5 558 aaKnown RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 ZNF700Q9H0M5 742 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 REEP4Q9H6H4 257 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 WDR55Q9H6Y2 383 aaPredicted RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 ADAP2Q9NPF8 381 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 FGFR1OP2Q9NVK5 253 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 P4HTMQ9NXG6 502 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 CES1P1Q9UKY3 287 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 TRIM33Q9UPN9 1127 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 HS3ST3B1Q9Y662 390 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 MRPS18BQ9Y676 258 aaKnown RBP11.43□□□□□ -0.58
DDX55-210ENST00000543016 ZNF780BQ9Y6R6 833 aa11.43□□□□□ -0.58
DDX55-210ENST00000543016 AKAP13Q12802 2813 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 ANKRD11Q6UB99 2663 aaPredicted RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 CDC14CA4D256 554 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 GMNCA6NCL1 334 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 SOCS6O14544 535 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 PGRMC2O15173 223 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 UBDO15205 165 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 NKX2-8O15522 239 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 SLITRK5O94991 958 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 HPP00738 406 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 G6PDP11413 515 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 MAOAP21397 527 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 TACR1P25103 407 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 STT3AP46977 705 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 ALDH9A1P49189 494 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 MRPL19P49406 292 aaKnown RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 XKP51811 444 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 HNRNPFP52597 415 aaKnown RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 CLNS1AP54105 237 aaKnown RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 OR4D2P58180 307 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 PLIN5Q00G26 463 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 FOLH1Q04609 750 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 IL10RAQ13651 578 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 COL9A2Q14055 689 aaPredicted RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 RPS6KA2Q15349 733 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 ELAVL1Q15717 326 aaKnown RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 EXT1Q16394 746 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 DPY19L1Q2PZI1 675 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 LSM12Q3MHD2 195 aaKnown RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 SLC9B1Q4ZJI4 515 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 LCE2DQ5TA82 110 aaPredicted RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 VWA5B1Q5TIE3 1220 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 CPZQ66K79 652 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 KIRREL2Q6UWL6 708 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 ANKRD37Q7Z713 158 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 LIX1Q8N485 282 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 GLB1L3Q8NCI6 653 aaPredicted RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 TMEM52Q8NDY8 209 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 OR11G2Q8NGC1 345 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 DAZLQ92904 295 aaKnown RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 TSSK3Q96PN8 268 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 C1orf50Q9BV19 199 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 NPHS2Q9NP85 383 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 SLC35C2Q9NQQ7 365 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 NECTIN3Q9NQS3 549 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 RYDENQ9NUL5 291 aaKnown RBP11.42□□□□□ -0.58
DDX55-210ENST00000543016 ATAD3AQ9NVI7 634 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 AIG1Q9NVV5 245 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 KLHL14Q9P2G3 628 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 ATP6V1HQ9UI12 483 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 UTS2RQ9UKP6 389 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 ZMIZ1Q9ULJ6 1067 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 CLDN16Q9Y5I7 305 aa11.42□□□□□ -0.58
DDX55-210ENST00000543016 NSG1A0A0A6YYJ2 146 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 GOLGA8QA0A0J9YX86 632 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 GOLGA8OA6NCC3 632 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 GOLGA8NF8WBI6 632 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 FGF17O60258 216 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 LDB3O75112 727 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 ITGB2P05107 769 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 IFI6P09912 130 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 FURINP09958 794 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 CPMP14384 443 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 PORP16435 677 aaPredicted RBP11.41□□□□□ -0.58
DDX55-210ENST00000543016 WT1P19544 449 aaPredicted RBP11.41□□□□□ -0.58
DDX55-210ENST00000543016 MPIP34949 423 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 ARFIP2P53365 341 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 GNGT1P63211 74 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 PDE7AQ13946 482 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 CEBPEQ15744 281 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 PDCD4Q53EL6 469 aaKnown RBP11.41□□□□□ -0.58
DDX55-210ENST00000543016 SFT2D3Q587I9 215 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 RIPOR1Q6ZS17 1223 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 CAMKMTQ7Z624 323 aa11.41□□□□□ -0.58
DDX55-210ENST00000543016 MTERF4Q7Z6M4 381 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms