RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ZNF704Q6ZNC4 412 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SYDE1Q6ZW31 735 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 OTOAQ7RTW8 1153 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PCGF5Q86SE9 256 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ASPGQ86U10 573 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 GTF2IRD2Q86UP8 949 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PM20D2Q8IYS1 436 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ARMC10Q8N2F6 343 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 OR2W6PQ8NHA6 318 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SGMS2Q8NHU3 365 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SLC44A1Q8WWI5 657 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 LRRC45Q96CN5 670 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 C1orf159Q96HA4 380 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ART5Q96L15 291 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 RUNDC3BQ96NL0 473 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 QRFPRQ96P65 431 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ERGIC2Q96RQ1 377 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PKP4Q99569 1192 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ASPNQ9BXN1 380 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ANGPTL4Q9BY76 406 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 KLHL4Q9C0H6 718 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SLCO5A1Q9H2Y9 848 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ZFP64Q9NPA5 681 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PSD3Q9NYI0 1048 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 AIPL1Q9NZN9 384 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 MYOTQ9UBF9 498 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 LPAR3Q9UBY5 353 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 MYO6Q9UM54 1294 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 BOKQ9UMX3 212 aaPredicted RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 SF3B6Q9Y3B4 125 aaKnown RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 EMC9Q9Y3B6 208 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 HYOU1Q9Y4L1 999 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 ATG4BQ9Y4P1 393 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PCDHGB3Q9Y5G1 929 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 PCDHA13Q9Y5I0 950 aa4.36□□□□□ -1.71
LIMS1-214ENST00000542845 YLPM1P49750 1951 aaKnown RBP4.36□□□□□ -1.71
LIMS1-214ENST00000542845 A0A087X0T9 212 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 MACROD2A1Z1Q3 448 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 GRID2IPA4D2P6 1211 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 MBD3L3A6NE82 208 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CD8B2A6NJW9 211 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF839A8K0R7 811 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 A8MXE2 369 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 E7ENX8 843 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 GFYI3L273 518 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 KPNA5O15131 536 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 NDUFS4O43181 175 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TCF21O43680 179 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 OR1F1O43749 312 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 KIAA0513O60268 411 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CEP104O60308 925 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 LMX1BO60663 402 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 GALR3O60755 368 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF354AO60765 605 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 MATN4O95460 622 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 IL18BPO95998 194 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CD3EP07766 207 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 SLC35G6P0C7Q6 338 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 FAM228BP0C875 321 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF888P0CJ79 500 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 RNH1P13489 461 aaKnown RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CYP4B1P13584 511 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 POU2F1P14859 743 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ITGA2P17301 1181 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CTNNA2P26232 953 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 FMO4P31512 558 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 GRK3P35626 688 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CYLC1P35663 651 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CD79BP40259 229 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 GPR143P51810 404 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 HK2P52789 917 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 EIF3BP55884 814 aaKnown RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 IL2P60568 153 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ABATP80404 500 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TAP2Q03519 686 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ASPHQ12797 758 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 SLC13A2Q13183 592 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 SEMA3AQ14563 771 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 HERC3Q15034 1050 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 PRSS53Q2L4Q9 553 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TMEM249Q2WGJ8 235 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 MIDNQ504T8 468 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 DCST1Q5T197 706 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ALKBH5Q6P6C2 394 aaKnown RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 DARS2Q6PI48 645 aaKnown RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 QSOX2Q6ZRP7 698 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 STRA8Q7Z7C7 330 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CLNKQ7Z7G1 428 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 KIAA1328Q86T90 577 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZBTB46Q86UZ6 589 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 PLD6Q8N2A8 252 aaKnown RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 AFAP1L2Q8N4X5 818 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 OTUD6BQ8N6M0 293 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF321PQ8N8H1 164 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CNEP1R1Q8N9A8 125 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TC2NQ8N9U0 490 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF740Q8NDX6 193 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 OR4L1Q8NH43 312 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms