RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	SLC5A12	Q1EHB4	618 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	MPEG1	Q2M385	716 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	VIT	Q6UXI7	678 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PTCHD4	Q6ZW05	846 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	ARMCX6	Q7L4S7	300 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	COMMD6	Q7Z4G1	85 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	CCDC190	Q86UF4	302 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	ATCAY	Q86WG3	371 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	MMP21	Q8N119	569 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	OR52N2	Q8NGI0	321 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	WDR36	Q8NI36	951 aa	Known RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	METTL2A	Q96IZ6	378 aa	Known RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PIP5K1A	Q99755	562 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	MTIF3	Q9H2K0	278 aa	Known RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	FBXL12	Q9NXK8	326 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	MKLN1	Q9UL63	735 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	YBX2	Q9Y2T7	364 aa	Known RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	HCN4	Q9Y3Q4	1203 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	GOLGA4	Q13439	2230 aa	Known RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	TTC36	A6NLP5	189 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	ARHGAP33	O14559	1287 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	MID1	O15344	667 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	CCNB2	O95067	398 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	KLK1	P06870	262 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	CNR2	P34972	360 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	GJA4	P35212	333 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	CHI3L1	P36222	383 aa	Predicted RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PIK3CB	P42338	1070 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PNLIPRP1	P54315	467 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	DEFA1	P59665	94 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	DEFA3	P59666	94 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	TEK	Q02763	1124 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF763	Q0D2J5	394 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	SSX1	Q16384	188 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	BCL7A	Q4VC05	210 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	KLHL17	Q6TDP4	642 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	IL17RD	Q8NFM7	739 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	ZDHHC5	Q9C0B5	715 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	CCDC177	Q9NQR7	707 aa	Predicted RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	SERGEF	Q9UGK8	458 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	ATP6V1H	Q9UI12	483 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	RAB23	Q9ULC3	237 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PRUNE2	Q8WUY3	3088 aa		11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	MN1	Q10571	1320 aa	Predicted RBP	11.91	□□□□□ -0.5
RNF4-222	ENST00000541204	PNMA8C	A0A1B0GUJ8	204 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	LOC110117498-PIK3R3	F6TDL0	507 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CCRL2	O00421	344 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	GPX5	O75715	221 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CCNK	O75909	580 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	KAT7	O95251	611 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	C1GALT1C1L	P0DN25	315 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CHM	P24386	653 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	LIMS1	P48059	325 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	COPZ1	P61923	177 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	FCHO2	Q0JRZ9	810 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	LEXM	Q3ZCV2	418 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	C11orf96	Q7Z7L8	435 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	GOT1L1	Q8NHS2	421 aa	Predicted RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	SLC5A11	Q8WWX8	675 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	GEMIN6	Q8WXD5	167 aa	Known RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	ZNF486	Q96H40	463 aa	Predicted RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CEP19	Q96LK0	163 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	IL4I1	Q96RQ9	567 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CDCA4	Q9BXL8	241 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	PCM1	Q15154	2024 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	EFCAB10	A6NFE3	127 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	C1QTNF3-AMACR	E9PGA6	284 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CYP7B1	O75881	506 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	APOA1	P02647	267 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	EIF2S1	P05198	315 aa	Known RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CBL	P22681	906 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	FCAR	P24071	287 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	PSMB5	P28074	263 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	SOAT1	P35610	550 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	ETV6	P41212	452 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	EEF1A2	Q05639	463 aa	Known RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	C2orf80	Q0P641	193 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	RUNX3	Q13761	415 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	PDGFRL	Q15198	375 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	PRSS53	Q2L4Q9	553 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	C6orf183	Q5T699	404 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	RSBN1	Q5VWQ0	802 aa	Predicted RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	AMZ2	Q86W34	360 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	OR2L2	Q8NH16	312 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	C9orf43	Q8TAL5	461 aa	Predicted RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	11.9	□□□□□ -0.5	8e-6	■□□□□ 10.5
RNF4-222	ENST00000541204	PPCDC	Q96CD2	204 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	RPP25	Q9BUL9	199 aa	Known RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CNPPD1	Q9BV87	410 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	TP63	Q9H3D4	680 aa	Predicted RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	OSGEPL1	Q9H4B0	414 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	MARCH7	Q9H992	704 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	NMNAT1	Q9HAN9	279 aa	Predicted RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	NEK6	Q9HC98	313 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	EXOSC4	Q9NPD3	245 aa	Known RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	MBNL1	Q9NR56	388 aa	Known RBP	11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	TAC3	Q9UHF0	121 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	MAPRE3	Q9UPY8	281 aa		11.9	□□□□□ -0.5
RNF4-222	ENST00000541204	CFL2	Q9Y281	166 aa		11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms