RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 PRAF2O60831 178 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ZNF254O75437 659 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 NDUFS3O75489 264 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RAD17O75943 681 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 KCNK5O95279 499 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ZNF682O95780 498 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CBX7O95931 251 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 IGLV3-25P01717 112 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CYP17A1P05093 508 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 F7P08709 466 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 PKMP14618 531 aaKnown RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 ZNF250P15622 560 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ARF4P18085 180 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 PRPS1L1P21108 318 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 KELP23276 732 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 PCGF2P35227 344 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 STK19P49842 368 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 PGGT1BP53609 377 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ERVK-21P61565 698 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RPS14P62263 151 aaKnown RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 SELENOWP63302 87 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 VLDLRP98155 873 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SP4Q02446 784 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 COX10Q12887 443 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 EIF4EBP2Q13542 120 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 GTF2H2Q13888 395 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 GNA13Q14344 377 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ZNF169Q14929 603 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 STK11Q15831 433 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ZNF792Q3KQV3 632 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 GGTA1PQ4G0N0 100 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RFTN2Q52LD8 501 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 PLA1AQ53H76 456 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ARHGAP15Q53QZ3 475 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SPIN4Q56A73 249 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SPANXN4Q5MJ08 99 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CELF3Q5SZQ8 465 aaKnown RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 SYPL2Q5VXT5 272 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SLC6A19Q695T7 634 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 EFCAB12Q6NXP0 572 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 GTF2H2CQ6P1K8 395 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CD200R1LQ6Q8B3 271 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 PAQR3Q6TCH7 311 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 KIAA1324Q6UXG2 1013 aaKnown RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 ALKAL1Q6UXT8 129 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 BAIAP2L2Q6UXY1 529 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 FAM196AQ6ZSG2 479 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 MILR1Q7Z6M3 343 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 NAXDQ8IW45 347 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SPACA3Q8IXA5 215 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CMIPQ8IY22 773 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SLC34A3Q8N130 599 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 TMEM86AQ8N2M4 240 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SYNPOQ8N3V7 929 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RYBPQ8N488 228 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 LINC00471Q8N535 108 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CAMKK1Q8N5S9 505 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RTL3Q8N8U3 475 aaKnown RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 ATAD1Q8NBU5 361 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CLRN3Q8NCR9 226 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 VPS37AQ8NEZ2 397 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 OR10G2Q8NGC3 310 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 OR52H1Q8NGJ2 320 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 NPLOC4Q8TAT6 608 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 FANK1Q8TC84 345 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CSGALNACT1Q8TDX6 532 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ASB13Q8WXK3 278 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 HERVK_113Q902F9 699 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 KCNJ9Q92806 393 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 USP7Q93009 1102 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 EXT2Q93063 718 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 OTULINQ96BN8 352 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 ZBED6CLQ96FA7 236 aaPredicted RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 CMTM7Q96FZ5 175 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CAMKK2Q96RR4 588 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 FEVQ99581 238 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RHNO1Q9BSD3 238 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 CCM2Q9BSQ5 444 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RSRP1Q9BUV0 290 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SLC19A3Q9BZV2 496 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 TKTL2Q9H0I9 626 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 GHITMQ9H3K2 345 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 IKZF5Q9H5V7 419 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 DBNDD1Q9H9R9 158 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SLC28A3Q9HAS3 691 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 EXOSC4Q9NPD3 245 aaKnown RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 PDGFCQ9NRA1 345 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 SNTG1Q9NSN8 517 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 TXNL4BQ9NX01 149 aaKnown RBP6.39□□□□□ -1.39
USP28-207ENST00000538475 RDH8Q9NYR8 311 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 GALPQ9UBC7 116 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 EPHA6Q9UF33 1036 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 NDRG3Q9UGV2 375 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 PFDN2Q9UHV9 154 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 UTS2RQ9UKP6 389 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 MGAT4AQ9UM21 535 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 RNF114Q9Y508 228 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 NME7Q9Y5B8 376 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 PCDHB1Q9Y5F3 818 aa6.39□□□□□ -1.39
USP28-207ENST00000538475 NLRC5Q86WI3 1866 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms