RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.26□□□□□ -2.05
CD44-238ENST00000534296 GPR83Q9NYM4 423 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 KIAA1217Q5T5P2 1943 aa2.26□□□□□ -2.05
CD44-238ENST00000534296 TP53BP1Q12888 1972 aaPredicted RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 UMODL1Q5DID0 1318 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 RPGRIP1LQ68CZ1 1315 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 TRBV2A0A0J9YWF9 115 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 A0A1W2PPR1 153 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ARHGAP42A6NI28 874 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 KRTAP9-6A8MVA2 160 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 NEDD8-MDP1E9PL57 170 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 SLC28A1O00337 649 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 BCL2L11O43521 198 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ZBTB14O43829 449 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 SSX5O60225 188 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 KINO60870 393 aaKnown RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 LRCH4O75427 683 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 AKAP3O75969 853 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ANXA9O76027 345 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 CALCAP01258 141 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 SERPINF2P08697 491 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 HOXD4P09016 255 aaPredicted RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 ODC1P11926 461 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 HSD17B1P14061 328 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 UGT1A6P19224 532 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ACADSBP45954 432 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 SLC1A6P48664 564 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 SLC7A2P52569 658 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 CRYBA2P53672 197 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 CASP9P55211 416 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 EVCP57679 992 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 CCZ1BP86790 482 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 CCZ1P86791 482 aaPredicted RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 FKBP3Q00688 224 aaKnown RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 WASHC5Q12768 1159 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 GPR50Q13585 617 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 TRA2AQ13595 282 aaKnown RBP eCLIP2.25□□□□□ -2.05
CD44-238ENST00000534296 FASTKQ14296 549 aaKnown RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 HEPACAMQ14CZ8 416 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 SGCBQ16585 318 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 UPP1Q16831 310 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 MPPE1Q53F39 396 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 MUC21Q5SSG8 566 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 HIST2H2AA3Q6FI13 130 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ZNF770Q6IQ21 691 aaPredicted RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 Q6ZR54 194 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 TMUB2Q71RG4 321 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ASRGL1Q7L266 308 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 MCM10Q7L590 875 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ADCK1Q86TW2 530 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ZNF410Q86VK4 478 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 C17orf64Q86WR6 236 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 MARCH9Q86YJ5 346 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 SERPINA12Q8IW75 414 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 LAX1Q8IWV1 398 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 PHC2Q8IXK0 858 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 DND1Q8IYX4 353 aaKnown RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 FBXW8Q8N3Y1 598 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 CHCHD4Q8N4Q1 142 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 LINC00612Q8N6U2 182 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 BANPQ8N9N5 519 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 OR4A16Q8NH70 328 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 C11orf45Q8TAV5 145 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 GPR148Q8TDV2 347 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 FAM46BQ96A09 425 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ESAMQ96AP7 390 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ZNF560Q96MR9 790 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 TNFRSF13CQ96RJ3 184 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 S1PR3Q99500 378 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 FUNDC2Q9BWH2 189 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 PINK1Q9BXM7 581 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 TSPYL1Q9H0U9 437 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 GANQ9H2C0 597 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 MOB1AQ9H8S9 216 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 JPT2Q9H910 190 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 GDF3Q9NR23 364 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ACOXLQ9NUZ1 547 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 PRR34Q9NV39 138 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 COPS7AQ9UBW8 275 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 UBQLN2Q9UHD9 624 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 NARFQ9UHQ1 456 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 TSPAN16Q9UKR8 245 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 ODF2LQ9ULJ1 636 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 FOXA2Q9Y261 457 aaPredicted RBP2.25□□□□□ -2.05
CD44-238ENST00000534296 OR1A2Q9Y585 309 aa2.25□□□□□ -2.05
CD44-238ENST00000534296 PCNX3Q9H6A9 2034 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 YJEFN3A6XGL0 299 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 NPIPB9F8W1W9 429 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 GPRIN2O60269 458 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 DUSP11O75319 330 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 SH3BGRLO75368 114 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 NXPH4O95158 308 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 OR6A2O95222 327 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 EPOP01588 193 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 IGKV3-15P01624 115 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 PTMAP06454 111 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 HIST1H2AGP0C0S8 130 aaPredicted RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 CT45A8P0DMV1 189 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 CT45A9P0DMV2 189 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 IL4RP24394 825 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms