RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GFM1Q96RP9 751 aaKnown RBP20.03■□□□□ 0.8
VPS28-212ENST00000530836 DPYSL5Q9BPU6 564 aa20.03■□□□□ 0.8
VPS28-212ENST00000530836 TPT1P8Q9HAU6 139 aa20.03■□□□□ 0.8
VPS28-212ENST00000530836 STOML1Q9UBI4 398 aa20.03■□□□□ 0.8
VPS28-212ENST00000530836 UTS2RQ9UKP6 389 aa20.03■□□□□ 0.8
VPS28-212ENST00000530836 RP1P56715 2156 aa20.03■□□□□ 0.8
VPS28-212ENST00000530836 IGHV5-51A0A0C4DH38 117 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ELOVL7A1L3X0 281 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ARPC2O15144 300 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 KIF1CO43896 1103 aaKnown RBP20.02■□□□□ 0.8
VPS28-212ENST00000530836 AIFM1O95831 613 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ABCB1P08183 1280 aaPredicted RBP20.02■□□□□ 0.8
VPS28-212ENST00000530836 NR2F6P10588 404 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 NTSP30990 170 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 EMP3P54852 163 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 HSD11B2P80365 405 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 SPIDRQ14159 915 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 MTX3Q5HYI7 312 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 HES3Q5TGS1 186 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ERICH5Q6P6B1 374 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 USP53Q70EK8 1073 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 CACTIN-AS1Q8N1I8 211 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ZFP90Q8TF47 636 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 N4BP2L2Q92802 583 aaPredicted RBP20.02■□□□□ 0.8
VPS28-212ENST00000530836 REXO5Q96IC2 774 aaKnown RBP20.02■□□□□ 0.8
VPS28-212ENST00000530836 IKZF5Q9H5V7 419 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 SYNDIG1Q9H7V2 258 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 CLK4Q9HAZ1 481 aaKnown RBP20.02■□□□□ 0.8
VPS28-212ENST00000530836 ANKHQ9HCJ1 492 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ENAMQ9NRM1 1142 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 GIMAP4Q9NUV9 329 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 EGFL7Q9UHF1 273 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ATXN7L1Q9ULK2 861 aaPredicted RBP20.02■□□□□ 0.8
VPS28-212ENST00000530836 DAPP1Q9UN19 280 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 ERVK-11Q9UQG0 969 aa20.02■□□□□ 0.8
VPS28-212ENST00000530836 TCRBV3S1A0A5B6 114 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 GALR3O60755 368 aaPredicted RBP20.02■□□□□ 0.79
VPS28-212ENST00000530836 KRT75O95678 551 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 CPNE6O95741 557 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 MT-CO3P00414 261 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 UQCRC2P22695 453 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 GABRA4P48169 554 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 ARL4DP49703 201 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 TNFRSF17Q02223 184 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 CFHR1Q03591 330 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 SLC34A1Q06495 639 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 IRAK1BP1Q5VVH5 260 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 TMPRSS7Q7RTY8 843 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 PYDC1Q8WXC3 89 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 EXOSC8Q96B26 276 aaKnown RBP20.02■□□□□ 0.79
VPS28-212ENST00000530836 AURKBQ96GD4 344 aaPredicted RBP20.02■□□□□ 0.79
VPS28-212ENST00000530836 MAPKAP1Q9BPZ7 522 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 ENTPD4Q9Y227 616 aa20.02■□□□□ 0.79
VPS28-212ENST00000530836 GSTA4O15217 222 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 MSL3P1P0C860 447 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 GGT1P19440 569 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 CPN2P22792 545 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 GZMMP51124 257 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 LIM2P55344 173 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 CLDN6P56747 220 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 VAC14Q08AM6 782 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 FAM53BQ14153 422 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 PRSS53Q2L4Q9 553 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 TMTC4Q5T4D3 741 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 RBM44Q6ZP01 1051 aaKnown RBP20.01■□□□□ 0.79
VPS28-212ENST00000530836 GPR155Q7Z3F1 870 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 GALNT15Q8N3T1 639 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 OR52E4Q8NGH9 312 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 PSMA8Q8TAA3 256 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 GORASP2Q9H8Y8 452 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 KCMF1Q9P0J7 381 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 NKX1-2Q9UD57 310 aaPredicted RBP20.01■□□□□ 0.79
VPS28-212ENST00000530836 CES1P1Q9UKY3 287 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 CLCA2Q9UQC9 943 aa20.01■□□□□ 0.79
VPS28-212ENST00000530836 D6RAR5 112 aa20■□□□□ 0.79
VPS28-212ENST00000530836 UMPSP11172 480 aa20■□□□□ 0.79
VPS28-212ENST00000530836 ANPEPP15144 967 aa20■□□□□ 0.79
VPS28-212ENST00000530836 EFNA1P20827 205 aaPredicted RBP20■□□□□ 0.79
VPS28-212ENST00000530836 OR4D2P58180 307 aa20■□□□□ 0.79
VPS28-212ENST00000530836 MRPS22P82650 360 aaKnown RBP20■□□□□ 0.79
VPS28-212ENST00000530836 FADDQ13158 208 aa20■□□□□ 0.79
VPS28-212ENST00000530836 DEFB110Q30KQ9 67 aa20■□□□□ 0.79
VPS28-212ENST00000530836 GLYATQ6IB77 296 aa20■□□□□ 0.79
VPS28-212ENST00000530836 CYP2R1Q6VVX0 501 aa20■□□□□ 0.79
VPS28-212ENST00000530836 MICU2Q8IYU8 434 aa20■□□□□ 0.79
VPS28-212ENST00000530836 ARHGEF39Q8N4T4 335 aa20■□□□□ 0.79
VPS28-212ENST00000530836 BBS4Q96RK4 519 aa20■□□□□ 0.79
VPS28-212ENST00000530836 NUDT22Q9BRQ3 303 aa20■□□□□ 0.79
VPS28-212ENST00000530836 SLC35A5Q9BS91 424 aa20■□□□□ 0.79
VPS28-212ENST00000530836 EFHD1Q9BUP0 239 aa20■□□□□ 0.79
VPS28-212ENST00000530836 GMPR2Q9P2T1 348 aaKnown RBP20■□□□□ 0.79
VPS28-212ENST00000530836 NAALAD2Q9Y3Q0 740 aa20■□□□□ 0.79
VPS28-212ENST00000530836 ZNF780BQ9Y6R6 833 aa20■□□□□ 0.79
VPS28-212ENST00000530836 CACNA1AO00555 2505 aa20■□□□□ 0.79
VPS28-212ENST00000530836 FITM1A5D6W6 292 aa19.99■□□□□ 0.79
VPS28-212ENST00000530836 ADRB1P08588 477 aa19.99■□□□□ 0.79
VPS28-212ENST00000530836 IL1RNP18510 177 aa19.99■□□□□ 0.79
VPS28-212ENST00000530836 CSF2RBP32927 897 aa19.99■□□□□ 0.79
VPS28-212ENST00000530836 MPIP34949 423 aa19.99■□□□□ 0.79
VPS28-212ENST00000530836 GCKP35557 465 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms