RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ATP6V1DQ9Y5K8 247 aa3.24□□□□□ -1.89
CD44-217ENST00000525348 PTPRTO14522 1441 aa3.24□□□□□ -1.89
CD44-217ENST00000525348 HCFC1P51610 2035 aa3.24□□□□□ -1.89
CD44-217ENST00000525348 TTC41PQ6P2S7 1318 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 TTC21AQ8NDW8 1320 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 IQSEC2Q5JU85 1478 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 CAMSAP1Q5T5Y3 1602 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 ADAMTS9Q9P2N4 1935 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 LOC105371242A0A075B767 164 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 HEATR9A2RTY3 570 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 CCDC69A6NI79 296 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 BIRC5O15392 142 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 RANBP6O60518 1105 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 NIPSNAP2O75323 286 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 HSPA4LO95757 839 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 HLA-DRAP01903 254 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 GLAP06280 429 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 GSTT2P0CG29 244 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 GSTT2BP0CG30 244 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 THEGLP0DJG4 465 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 EEF2P13639 858 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 SELEP16581 610 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 POLR2EP19388 210 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 IL11P20809 199 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 ELAVL4P26378 380 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 PDHA2P29803 388 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 RFC4P35249 363 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 SLC26A5P58743 744 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 SMARCB1Q12824 385 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 SRSF9Q13242 221 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-217ENST00000525348 FAM189A2Q15884 450 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 SNCBQ16143 134 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 HSP90AA5PQ58FG0 334 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 C9orf152Q5JTZ5 239 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 IL23RQ5VWK5 629 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 RAB12Q6IQ22 244 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 PPIP5K1Q6PFW1 1433 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 OLFM4Q6UX06 510 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 DET1Q7L5Y6 550 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 POGZQ7Z3K3 1410 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 GALNTL5Q7Z4T8 443 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 PRPF39Q86UA1 669 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 ERO1BQ86YB8 467 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 CCAR2Q8N163 923 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 LRTM2Q8N967 370 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 XXYLT1Q8NBI6 393 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 LRRC15Q8TF66 581 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 CHPT1Q8WUD6 406 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 KCNE4Q8WWG9 221 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 ROBO4Q8WZ75 1007 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 RASL10AQ92737 203 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 PROX1Q92786 737 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 C11orf24Q96F05 449 aaPredicted RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 SLC45A3Q96JT2 553 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 CABS1Q96KC9 395 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 ATP6V1G3Q96LB4 118 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 LRRC3BQ96PB8 259 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 ERBINQ96RT1 1412 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 GAL3ST1Q99999 423 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 DDX50Q9BQ39 737 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 ZNF577Q9BSK1 485 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 C9orf16Q9BUW7 83 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 SPZ1Q9BXG8 430 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 FAM107BQ9H098 131 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 NT5C3AQ9H0P0 336 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 C2orf40Q9H1Z8 148 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 LY9Q9HBG7 655 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 MRM3Q9HC36 420 aaKnown RBP3.23□□□□□ -1.89
CD44-217ENST00000525348 TM9SF3Q9HD45 589 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 SENP1Q9P0U3 644 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 SATB2Q9UPW6 733 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 HEY1Q9Y5J3 304 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 ZFYVE16Q7Z3T8 1539 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 DISP1Q96F81 1524 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 MAP3K5Q99683 1374 aa3.23□□□□□ -1.89
CD44-217ENST00000525348 WDR19Q8NEZ3 1342 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 SH3TC1Q8TE82 1336 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 TRAV24A0A0B4J272 114 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 GOLGA8IPA6NC78 632 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 GOLGA8JA6NMD2 632 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 GOLGA8TH3BQL2 631 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 H7C0S8 307 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 K7EPI3 171 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 CLDN4O14493 209 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 POLR2DO15514 142 aaKnown RBP3.22□□□□□ -1.89
CD44-217ENST00000525348 TLX2O43763 284 aaPredicted RBP3.22□□□□□ -1.89
CD44-217ENST00000525348 ECE2O60344 883 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 SNX3O60493 162 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 SNAP91O60641 907 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 DKC1O60832 514 aaKnown RBP eCLIP3.22□□□□□ -1.89
CD44-217ENST00000525348 SMPD2O60906 423 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 SUPT3HO75486 399 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 APOEP02649 317 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 RHOXF2BP0C7M4 288 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 PABPC4LP0CB38 370 aaKnown RBP3.22□□□□□ -1.89
CD44-217ENST00000525348 GOLGA8HP0CJ92 632 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 H2AFXP16104 143 aaPredicted RBP3.22□□□□□ -1.89
CD44-217ENST00000525348 TRIM23P36406 574 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 ETV5P41161 510 aa3.22□□□□□ -1.89
CD44-217ENST00000525348 IFNAR2P48551 515 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms